View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_15 (Length: 439)

Name: NF16661_high_15
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_15
NF16661_high_15
[»] chr5 (5 HSPs)
chr5 (18-157)||(33094042-33094181)
chr5 (262-353)||(33100646-33100737)
chr5 (158-234)||(33094235-33094311)
chr5 (393-430)||(33100777-33100814)
chr5 (158-191)||(33094208-33094241)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 33094042 - 33094181
Alignment:
Q  18 aattggacgatctaggaggagaatttcacgattcagacggtgaacttggtgatgctagaggcaaagtgggcgattcaggaggtgagcttggtgattcttg 117  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  33094042 aattggacgatctaggatgagaatttcgcgattcagacggtgaacttggtgatgctggaggcaaagtgggtgattcaggaggtgagcttggtgattcttg 33094141  T
Q  118 aggtggactagacattttagaatttgaaggtgtacttggt 157  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  33094142 aggtggactagacattttaggatttggaggtgtacttggt 33094181  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 33100646 - 33100737
Alignment:
Q  262 tcgccacctctttgttaaaggtgaatgagattttgcaatgaaggactcaaatttctcaaaagaccattttatgtctcaaaagaaattacgct 353  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33100646 tcgccacctatttgttaaaggtgaatgagattttggaatgaaggactcaaatttctcaaaagaccattttatgtctcaaaagaaattacgct 33100737  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 33094235 - 33094311
Alignment:
Q  158 ccatccaggaataattggaatatcgggccatccatgtctgtctcgacaaggatgaattaattacaaatttttaaagc 234  Q
    ||||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  33094235 ccatccaggtatgattggaatatcgggccatccatgtatgtcttgacaaggatgaattaattacaaatttttaaagc 33094311  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 33100777 - 33100814
Alignment:
Q  393 aataacaatagcaatgaaggtgtgtctcttagtattat 430  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33100777 aataacaatagcaatgaaggtgtgtctcttagtattat 33100814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 33094208 - 33094241
Alignment:
Q  158 ccatccaggaataattggaatatcgggccatcca 191  Q
    ||||||||||||||||||||||||||||||||||    
T  33094208 ccatccaggaataattggaatatcgggccatcca 33094241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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