View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_16 (Length: 436)

Name: NF16661_high_16
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_16
NF16661_high_16
[»] chr5 (10 HSPs)
chr5 (28-427)||(41490640-41491032)
chr5 (17-427)||(41486312-41486727)
chr5 (163-427)||(41488205-41488469)
chr5 (163-427)||(41489908-41490170)
chr5 (173-427)||(41489063-41489310)
chr5 (163-427)||(41487342-41487600)
chr5 (17-116)||(41487179-41487278)
chr5 (17-77)||(41488921-41488981)
chr5 (23-74)||(36236159-36236210)
chr5 (17-46)||(41490602-41490631)
[»] chr2 (3 HSPs)
chr2 (23-76)||(10850713-10850766)
chr2 (23-76)||(10878227-10878280)
chr2 (23-76)||(32964531-32964584)
[»] chr1 (1 HSPs)
chr1 (245-309)||(19352300-19352364)


Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 28 - 427
Target Start/End: Original strand, 41490640 - 41491032
Alignment:
Q  28 aagtattgtaagctatcttaatattacaaacaagtagaaggattatagttgcaaattctaattaacaaactgatgcccactttccaaaacttttatttat 127  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  41490640 aagtattgtaagttatcttaatattacaaacaagtagaaggattatagttgcaaattctaattaacaaactgatgccaa-tttccaaaacatttatttat 41490738  T
Q  128 atccactttggtttcgcnnnnnnnnnnnnnnnnngtcactcttattgtgcaagagagactctctttctctaagcttcaaaaaggttatccttcaaaatct 227  Q
    |||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41490739 atccactttggtttc------atttttcttttttgtcactcttattgtgcaagagagactctctttctctaagcttcaaaaaggttatcctgcaaaatct 41490832  T
Q  228 atttgctcattggagaatttcttttctcttttatctccaactcaacctcttcttatttcttcgatcttcactcatttgtctcaatttgctggttgtcagt 327  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41490833 atttgctccttggagaatttcttttctcttttatctccaactcaacctcttcttatttcttcgatcttcactcatttgtctcaatttgctggttgtcagt 41490932  T
Q  328 ttctacgaattataggggggttcgcgaacaaattagcagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattat 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  41490933 ttctacgaattataggggggttcgcgaacaaattagcagaagtaccacatacaaatacgcaagtagcgattcacagtttacatcatgttaagagaattat 41491032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 41486312 - 41486727
Alignment:
Q  17 actatttaattaagtattgtaagctatcttaatattacaaacaagtagaaggattatagttgcaaattctaattaacaaactgatgcccactttccaaaa 116  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||  | ||||||| |||  | |||| |||||||||||    
T  41486312 actatttaattaagtataataagctatcttaatattgcaaacaagtagaaggattatagtagcaagctgtaattaataaaacggtgccaactttccaaaa 41486411  T
Q  117 -cttttatttatatccactttggtttcgcnnnnnnnnnnnnnnnnngt------cactcttattgtgcaagagagactctctttctctaagcttcaaaaa 209  Q
     ||||  |||||||| |||||| ||||||                 ||      |||||||||||||||||||| ||||||||||||| |||||||||||    
T  41486412 actttcttttatatctactttgctttcgctttttttttttcttcccgtttttatcactcttattgtgcaagagacactctctttctcttagcttcaaaaa 41486511  T
Q  210 ggttatccttcaaaatctatttgctcattggagaatttcttttctcttttatctccaactcaacc---tcttcttatttcttcgatcttcactcatttgt 306  Q
    ||||||||| |||| | |||||| || ||| |||||| | |||||||||||||| ||||||||||   ||||||| ||| ||||| | |||||||  |||    
T  41486512 ggttatcctgcaaactttatttggtccttgaagaattccctttctcttttatctgcaactcaaccttttcttcttctttattcgaccatcactcacatgt 41486611  T
Q  307 ctcaatttgctggttgtcagtttctacgaattatag--gggggttcgcgaacaaattagcagaagtaccacatacaaatacgcaagtagcgattcacggt 404  Q
    |||| |||||       ||||||| |||||||   |  ||||| | |||| ||||||| ||| | ||||||| |||| ||||||||||  ||||||||||    
T  41486612 ctcagtttgc-------cagtttcaacgaattgagggtggggggttgcgatcaaattaacagtactaccacaaacaagtacgcaagtactgattcacggt 41486704  T
Q  405 tcacatcatgttaagagaattat 427  Q
    ||||||||||||||| |||||||    
T  41486705 tcacatcatgttaagcgaattat 41486727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 163 - 427
Target Start/End: Original strand, 41488205 - 41488469
Alignment:
Q  163 tcactcttattgtg--caagagagactctctttctctaagcttcaaaaaggttatccttcaaaatctatttgctcattggagaatttcttttctctttta 260  Q
    ||||||||||||||  ||||||| |||| |||||||||| |||||||||||||||||| |||| | ||||||||| ||| ||||||   |||||||||||    
T  41488205 tcactcttattgtgtgcaagagacactccctttctctaaacttcaaaaaggttatcctgcaaactttatttgctccttgaagaattctctttctctttta 41488304  T
Q  261 tctccaactcaacctcttct---tatttcttcgatcttcactcatttgtctcaatttgctggttgtcagtttctacgaattatag--gggggttcgcgaa 355  Q
    || |||||||||||||||||   | ||||||| ||||||||||| |||||| |||| ||       |||||||| |||||||  |  ||||| | |||||    
T  41488305 tccccaactcaacctcttcttcatttttcttcaatcttcactcacttgtctaaattcgc-------cagtttcttcgaattaagggtggggggttgcgaa 41488397  T
Q  356 caaattagcagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattat 427  Q
    ||||||| ||||| ||||||| |||| ||||||||||  ||||||||||||||||||||||||| |||||||    
T  41488398 caaattaacagaactaccacaaacaagtacgcaagtactgattcacggttcacatcatgttaagcgaattat 41488469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 163 - 427
Target Start/End: Original strand, 41489908 - 41490170
Alignment:
Q  163 tcactcttattgtgcaagagagactctctttctctaagcttcaaaaaggttatccttcaaaatctatttgctcattggagaatttcttttctcttttatc 262  Q
    |||||||||||  |||||| | ||||||||||||||||||||||||||| |||| | |||| | ||||||||| ||| ||||||   |||||||||||||    
T  41489908 tcactcttattacgcaagaaacactctctttctctaagcttcaaaaagggtatcatgcaaactttatttgctccttgaagaattctctttctcttttatc 41490007  T
Q  263 tccaactcaacctc---ttcttatttcttcgatcttcactcatttgtctcaatttgctggttgtcagtttctacgaattatag--gggggttcgcgaaca 357  Q
    ||||||||||||||   ||| | ||||||| ||| ||||||| |||||| |||       | ||||||||||||||||||  |  ||||| | |||||||    
T  41490008 tccaactcaacctctttttcatttttcttcaatcatcactcacttgtctaaat-------tcgtcagtttctacgaattaagggtggggggttgcgaaca 41490100  T
Q  358 aattagcagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattat 427  Q
    ||||||||||||||||||| | || ||| |||||| |||||| || ||||||||||||||||||||||||    
T  41490101 aattagcagaagtaccacaaaaaagtacacaagtaccgattcgcgattcacatcatgttaagagaattat 41490170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 427
Target Start/End: Original strand, 41489063 - 41489310
Alignment:
Q  173 tgtgcaagagagactctctttctctaagcttcaaaaaggttatccttcaaaatctatttgctcattggagaatttcttttctcttttatctccaactcaa 272  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||   ||||||||||||||||||||       
T  41489063 tgtgcaagaaacactctctttctctaagcttcaaaaaggttatcctgcaaactttatttgctcattgaagaattctctttctcttttatctccaact--- 41489159  T
Q  273 cctcttcttatttcttcgatcttcactcatttgtctcaatttgctggttgtcagtttctacgaatta----taggggggttcgcgaacaaattagcagaa 368  Q
    | ||||| | ||||||| ||||||| ||| |||||| |||| ||       ||||||||||||||||    | |||||||| |||||||||||| |||||    
T  41489160 cttcttcatttttcttcaatcttcaatcacttgtctaaattcgc-------cagtttctacgaattaagggtgggggggtt-gcgaacaaattaacagaa 41489251  T
Q  369 gtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattat 427  Q
     ||||||| |||| ||||||||||  ||||||||||| ||||||||||||| |||||||    
T  41489252 ctaccacaaacaagtacgcaagtactgattcacggttgacatcatgttaagcgaattat 41489310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 427
Target Start/End: Original strand, 41487342 - 41487600
Alignment:
Q  163 tcactcttattgtg--caagagagactctctttctctaagcttcaaaaaggttatccttcaaaatctatttgctcattggagaatttcttttctctttta 260  Q
    ||||||||||||||  ||||| | |||||||||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||   |||||||||||    
T  41487342 tcactcttattgtgtgcaagaaacactctctttctctaagcttcaaaaaggttatcctacaaactttatttgctcattgaagaattctctttctctttta 41487441  T
Q  261 tctccaactcaacctcttcttatttcttcgatcttcactcatttgtctcaatttgctggttgtcagtttctacgaattatag--gggggttcgcgaacaa 358  Q
    ||||||||    | ||||| | ||||||| ||||||| ||| |||||| |||| ||       ||||||||||||||||  |  ||||| | ||||||||    
T  41487442 tctccaac---ccgtcttcatttttcttcaatcttcaatcacttgtctaaattcgc-------cagtttctacgaattaagggtggggggttgcgaacaa 41487531  T
Q  359 attagcagaagtaccacatacaaatacgcaagtagcgattcacggttcacatcatgttaagagaattat 427  Q
    |||| ||||| ||||||| |||| ||||||||||  ||||||||||| ||||||||||||| |||||||    
T  41487532 attaacagaactaccacaaacaagtacgcaagtactgattcacggttgacatcatgttaagcgaattat 41487600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 41487179 - 41487278
Alignment:
Q  17 actatttaattaagtattgtaagctatcttaatattacaaacaagtagaaggattatagttgcaaattctaattaacaaactgatgcccactttccaaaa 116  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||| |||| | ||||||| |||||| ||||||||||||||||    
T  41487179 actatttaattaagtatagtgagctatcttaatattgcaaacaagtagaatgattatagttacaaactgtaattaataaactggtgcccactttccaaaa 41487278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 41488921 - 41488981
Alignment:
Q  17 actatttaattaagtattgtaagctatcttaatattacaaacaagtagaaggattatagtt 77  Q
    ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  41488921 actatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtt 41488981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 36236210 - 36236159
Alignment:
Q  23 taattaagtattgtaagctatcttaatattacaaacaagtagaaggattata 74  Q
    ||||||||||| ||||  |||||||||||| |||| ||||||||||||||||    
T  36236210 taattaagtatagtaatatatcttaatattgcaaaaaagtagaaggattata 36236159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 41490602 - 41490631
Alignment:
Q  17 actatttaattaagtattgtaagctatctt 46  Q
    ||||||||||||||||||||||||||||||    
T  41490602 actatttaattaagtattgtaagctatctt 41490631  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 10850713 - 10850766
Alignment:
Q  23 taattaagtattgtaagctatcttaatattacaaacaagtagaaggattatagt 76  Q
    ||||||||||| |||||||||||||||||| |||| | ||||||||||||||||    
T  10850713 taattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagt 10850766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 10878227 - 10878280
Alignment:
Q  23 taattaagtattgtaagctatcttaatattacaaacaagtagaaggattatagt 76  Q
    ||||||||||| |||||||||||||||||| |||| | ||||||||||||||||    
T  10878227 taattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagt 10878280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 32964531 - 32964584
Alignment:
Q  23 taattaagtattgtaagctatcttaatattacaaacaagtagaaggattatagt 76  Q
    ||||||||||||| ||||||||||||||||  ||| ||||||||| | ||||||    
T  32964531 taattaagtattgcaagctatcttaatattgtaaaaaagtagaagaagtatagt 32964584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 19352300 - 19352364
Alignment:
Q  245 tttcttttctcttttatctccaactcaacctcttcttatttcttcgatcttcactcatttgtctc 309  Q
    |||| |||| ||||||||||| ||||||| ||||| | |||||||||| || ||||| |||||||    
T  19352300 tttcctttcccttttatctcctactcaacatcttcctctttcttcgatatttactcacttgtctc 19352364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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