View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_2 (Length: 712)

Name: NF16661_high_2
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_2
NF16661_high_2
[»] chr3 (5 HSPs)
chr3 (13-694)||(32416631-32417303)
chr3 (101-192)||(1613912-1614001)
chr3 (93-197)||(29359213-29359314)
chr3 (117-186)||(4525197-4525265)
chr3 (93-196)||(45953912-45954013)
[»] chr1 (8 HSPs)
chr1 (94-197)||(46510624-46510726)
chr1 (117-190)||(23175834-23175906)
chr1 (88-197)||(28215941-28216045)
chr1 (94-196)||(15608861-15608961)
chr1 (92-186)||(43741118-43741210)
chr1 (117-197)||(28750073-28750152)
chr1 (98-197)||(31730522-31730619)
chr1 (92-186)||(2730384-2730476)
[»] chr8 (9 HSPs)
chr8 (93-197)||(28237285-28237387)
chr8 (114-192)||(33744393-33744470)
chr8 (94-190)||(35065511-35065605)
chr8 (115-197)||(10167689-10167770)
chr8 (115-197)||(10675544-10675625)
chr8 (148-186)||(33970650-33970688)
chr8 (88-197)||(17075310-17075417)
chr8 (88-197)||(17572853-17572960)
chr8 (119-196)||(32222677-32222753)
[»] chr6 (11 HSPs)
chr6 (93-197)||(31842455-31842557)
chr6 (96-197)||(4058859-4058958)
chr6 (117-191)||(10117895-10117968)
chr6 (96-196)||(7466452-7466551)
chr6 (89-196)||(29681594-29681699)
chr6 (151-197)||(6153799-6153845)
chr6 (95-197)||(6366625-6366725)
chr6 (115-197)||(9242396-9242477)
chr6 (93-191)||(34556551-34556646)
chr6 (154-191)||(13685536-13685573)
chr6 (151-196)||(32132033-32132078)
[»] chr4 (10 HSPs)
chr4 (91-191)||(26629429-26629527)
chr4 (94-196)||(33181509-33181609)
chr4 (95-196)||(33230382-33230481)
chr4 (91-196)||(2717296-2717399)
chr4 (88-196)||(8459529-8459635)
chr4 (93-197)||(48148762-48148864)
chr4 (94-190)||(54682920-54683014)
chr4 (115-197)||(23256976-23257057)
chr4 (115-197)||(27704688-27704769)
chr4 (96-186)||(37133412-37133500)
[»] chr7 (10 HSPs)
chr7 (97-196)||(43359523-43359620)
chr7 (96-197)||(40934443-40934542)
chr7 (92-196)||(40081845-40081947)
chr7 (148-197)||(8238685-8238734)
chr7 (94-191)||(41506505-41506600)
chr7 (93-191)||(29368836-29368931)
chr7 (94-191)||(25513550-25513645)
chr7 (88-197)||(37220349-37220456)
chr7 (156-197)||(38444464-38444505)
chr7 (148-197)||(47764610-47764659)
[»] chr5 (2 HSPs)
chr5 (117-186)||(3308611-3308679)
chr5 (94-196)||(34578300-34578399)
[»] scaffold0223 (1 HSPs)
scaffold0223 (115-191)||(28126-28201)
[»] chr2 (6 HSPs)
chr2 (92-196)||(38556245-38556347)
chr2 (115-197)||(11723571-11723653)
chr2 (151-190)||(39134521-39134560)
chr2 (93-191)||(6334105-6334201)
chr2 (94-164)||(43927758-43927826)
chr2 (81-186)||(12262721-12262824)


Alignment Details
Target: chr3 (Bit Score: 572; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 13 - 694
Target Start/End: Complemental strand, 32417303 - 32416631
Alignment:
Q  13 agcataggtaagtgcttatagtataaatgcttatatataagtgtttatgcatgaggtaattattctatataaatcaattatagggttaattaagtaatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||| ||    
T  32417303 agcataggtaagtgcttatagtataaatgcttatatataagtgtttatgcatgaggta-----------taaatcaattatagggttaattaagtaa-at 32417216  T
Q  113 tatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaannnnnnnagtcccta 212  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  32417215 gatccctataaatatttagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaatttttttagtcccta 32417116  T
Q  213 tnnnnnnnnttcatcagcattattaattataaatcgcaccatgttaagtagatcgatacactcaaataaataaatacaaacaagtctttagtttgtttga 312  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32417115 taaaaaaaattcatcagcattattaattataaatcgcaccatgttaagtagatcgatacactcaaataaataaatacaaacaagtctttagtttgtttga 32417016  T
Q  313 tttaaggaaactttcaagcataccctattttaagaaatatgtta---ttcttttatttcttgggcatttgaaattcagatgtatatcaaatgaacacata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32417015 tttaaggaaactttcaagcataccctattttaagaaatatgttactattcttttatttcttgggcatttgaaattcagatgtatatcaaatgaacacata 32416916  T
Q  410 tgttattataatgtaggctgcaagatcagaaattttcaagaatatgctagagattgatgaatgtaaagctgcaccaacttgtaacacaataactatacct 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32416915 tgttattataatgtaggctgcaagatcagaaattttcaagaatatgctagagattgatgaatgtaaagctgcaccaacttgtaacacaataactatacct 32416816  T
Q  510 gacctaaaccatgaagaactagaatctctcctagagtttctctacagtggtacattacctttggaaaaattggagaaacatgtgtatgccttgtcacaag 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32416815 gacctaaaccatgaagaactagaatctctcctagagtttctctacagtggtacattacctttggaaaaattggagaaacatgtgtatgccttgtcacaag 32416716  T
Q  610 cagctgataagtatattatcccacatttgctgaaatactgtgaaagatacttgttcagctcacttagtacttctaatgcatttga 694  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32416715 cagctgataagtatattatcccacatttgctgaaatactgtgaaagatacttgttcagctcacttagtacttctaatgcatttga 32416631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 1614001 - 1613912
Alignment:
Q  101 attaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    ||||||||| || ||||||||||||| ||||||||| ||||| | ||||||  ||||||||||||||| ||||||| |||||||||||||||    
T  1614001 attaagtaa-atgatccctataaatatttagaattttatttttagtcccttc-aaaataaaatcgcactttttagtacctgtaaaattttca 1613912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 29359314 - 29359213
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    ||||||||||||||||| ||   ||||||||||| | ||||||| ||||| ||  ||||| ||||||||||| ||| ||||||||||| ||||||||||     
T  29359314 tagggttaattaagtaa-atggaccctataaatattcagaattttattttaat--ccttacaaaataaaatcacactttttagtccctataaaattttcc 29359218  T
Q  193 atcaa 197  Q
    |||||    
T  29359217 atcaa 29359213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 4525265 - 4525197
Alignment:
Q  117 cctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaa 186  Q
    ||||||||||  |||||||||||||| | ||| ||| ||||||||||||||| ||||||||| |||||||    
T  4525265 cctataaatatctagaatttcatttttagtcc-ttacaaaataaaatcgcactttttagtccttgtaaaa 4525197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 45953912 - 45954013
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    ||||||||||||||||| ||  ||||| |||||| | |||||||  |||| | ||||| ||||||||||||| ||| ||||||||| | ||||||||||     
T  45953912 tagggttaattaagtaa-atggtccctgtaaatattcagaattttgtttttagtccct-ataaaataaaatcacactttttagtccttataaaattttcc 45954009  T
Q  193 atca 196  Q
    ||||    
T  45954010 atca 45954013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 197
Target Start/End: Complemental strand, 46510726 - 46510624
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaa 193  Q
    |||||||||||||||| ||  |||||||||||| | |||||||  |||| | |||||   ||||||||||||||| |||||||||||||||||||||| |    
T  46510726 agggttaattaagtaa-atggtccctataaatattcagaattttgtttttagtccctacaaaaataaaatcgcactttttagtccctgtaaaattttcca 46510628  T
Q  194 tcaa 197  Q
    ||||    
T  46510627 tcaa 46510624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 23175906 - 23175834
Alignment:
Q  117 cctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaatttt 190  Q
    ||||| |||| ||||||||| ||||| | ||||| |||||||||||||| || |||||||||||||||||||||    
T  23175906 cctattaatatttagaattttatttttagtccct-ataaaataaaatcgtactttttagtccctgtaaaatttt 23175834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 28216045 - 28215941
Alignment:
Q  88 aattatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaat 187  Q
    |||||||||||||||||||||| || ||||||||||||| ||||||||   |||| | |||| || |||||||| || ||| |||||||| || ||||||    
T  28216045 aattatagggttaattaagtaa-ataatccctataaatatttagaatt---tttttagtccc-tacaaaataaagtcacactttttagtctctataaaat 28215951  T
Q  188 tttcaatcaa 197  Q
    |||| |||||    
T  28215950 tttccatcaa 28215941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 15608961 - 15608861
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaa 193  Q
    |||||||||||||||| ||  ||||| |||||| | ||||||| ||||| | ||||| | ||||||||||| ||| ||||||||||| |||||||||| |    
T  15608961 agggttaattaagtaa-atggtccctgtaaatattcagaattttatttttagtccct-acaaaataaaatcacactttttagtccctataaaattttcta 15608864  T
Q  194 tca 196  Q
    |||    
T  15608863 tca 15608861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 43741118 - 43741210
Alignment:
Q  92 atagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaa 186  Q
    |||||||||||||||||| ||  ||| |||||||| | ||||||| ||||| |||   ||||||||||||||| ||| |||||||||||||||||    
T  43741118 atagggttaattaagtaa-atggtccttataaatattcagaattttatttttattat-ttataaaataaaatcacactttttagtccctgtaaaa 43741210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 28750073 - 28750152
Alignment:
Q  117 cctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| |||||||  |||| | ||| ||| ||||||||||| ||| ||||||||||| |||||||||| |||||    
T  28750073 cctataaataatcagaattttgtttttaatcc-ttacaaaataaaatcacactttttagtccctataaaattttccatcaa 28750152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 31730522 - 31730619
Alignment:
Q  98 ttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| || ||||||||||||| | |||||||  |||| | ||||| | ||||||||||| ||  ||||||||||| |||||||||| |||||    
T  31730522 ttaattaagtaa-atgatccctataaatattcagaattttgtttttagtccct-acaaaataaaatcacaatttttagtccctataaaattttccatcaa 31730619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 2730476 - 2730384
Alignment:
Q  92 atagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaa 186  Q
    |||||||||||||||||| || |||| |||||||| | ||||||| ||||| | ||| ||| ||||||||||| ||| ||||||| ||| |||||    
T  2730476 atagggttaattaagtaa-atcatccttataaatattcagaattttatttttaatcc-ttacaaaataaaatcacactttttagttcctataaaa 2730384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 28237285 - 28237387
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    ||||||||||||||||| || ||||||||||||| | |||||||  |||| | ||||| | ||||||||||| ||| ||||||||||| ||||||||||     
T  28237285 tagggttaattaagtaa-atgatccctataaatattcagaattttgtttttagtccct-acaaaataaaatcacactttttagtccctataaaattttcc 28237382  T
Q  193 atcaa 197  Q
    |||||    
T  28237383 atcaa 28237387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 33744470 - 33744393
Alignment:
Q  114 atccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    ||||||||||||| | ||||||| ||||| | ||||| | ||||||||||| ||| ||||||||||| |||||||||||    
T  33744470 atccctataaatattcagaattttatttttagtccct-acaaaataaaatcacactttttagtccctataaaattttca 33744393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 35065511 - 35065605
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaatttt 190  Q
    |||||||||||||||| ||  |||||||||||| | |||||||  |||| | ||||| | ||||||||||| ||| ||||||||||| |||||||||    
T  35065511 agggttaattaagtaa-atagtccctataaatattcagaattttgtttttagtccct-acaaaataaaatcacactttttagtccctataaaatttt 35065605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 10167770 - 10167689
Alignment:
Q  115 tccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| |||||||||  |||| | ||||| | ||||||||||| ||| ||||||||| | |||||||||| |||||    
T  10167770 tccctataaatatttagaattttgtttttagtccctaa-aaaataaaatcacactttttagtccttataaaattttccatcaa 10167689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 10675625 - 10675544
Alignment:
Q  115 tccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| | ||||||| ||||| | ||| ||| ||||||||||| ||| ||||||| ||| |||||||||| |||||    
T  10675625 tccctataaatattcagaattttatttttagtcc-ttacaaaataaaatcacactttttagttcctataaaattttccatcaa 10675544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 33970650 - 33970688
Alignment:
Q  148 ccttataaaataaaatcgcacattttagtccctgtaaaa 186  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  33970650 ccttataaaataaaatcgcactttttagtccttgtaaaa 33970688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 17075310 - 17075417
Alignment:
Q  88 aattatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaat 187  Q
    ||||| |||||||||||||||| || ||| ||||||||| | | ||||| ||||| | ||||| | ||||||||||| ||| ||||| ||  ||||||||    
T  17075310 aattaaagggttaattaagtaa-atgatctctataaatattcaaaattttatttttagtccct-acaaaataaaatcacaccttttattctttgtaaaat 17075407  T
Q  188 tttcaatcaa 197  Q
    |||| |||||    
T  17075408 tttctatcaa 17075417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 17572960 - 17572853
Alignment:
Q  88 aattatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaat 187  Q
    ||||| |||||||||||||||| || ||| ||||||||| | | ||||| ||||| | ||||| | ||||||||||| ||| ||||| ||  ||||||||    
T  17572960 aattaaagggttaattaagtaa-atgatctctataaatattcaaaattttatttttagtccct-acaaaataaaatcacaccttttattctttgtaaaat 17572863  T
Q  188 tttcaatcaa 197  Q
    |||| |||||    
T  17572862 tttctatcaa 17572853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 32222677 - 32222753
Alignment:
Q  119 tataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatca 196  Q
    |||||||| | |||||||| |||| |||| ||  |||||||||||||||  ||||||||| |||||||||||| ||||    
T  32222677 tataaatattcagaatttcgtttttattctctg-taaaataaaatcgcattttttagtccttgtaaaattttccatca 32222753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 31842455 - 31842557
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    |||||||||| |||||| ||| ||| |||||||| |||||||||  |||| | ||||| | ||||||||||||||| ||||||||||| ||||||||||     
T  31842455 tagggttaataaagtaa-attgtccttataaatatttagaattttgtttttagtccct-acaaaataaaatcgcactttttagtccctataaaattttct 31842552  T
Q  193 atcaa 197  Q
    |||||    
T  31842553 atcaa 31842557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 4058859 - 4058958
Alignment:
Q  96 ggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatc 195  Q
    |||||||||||||| ||  || ||||||||| ||||||||| ||||| | ||||| | ||||||||||| ||| ||||||||||| |||||||||| |||    
T  4058859 ggttaattaagtaa-atggtctctataaatatttagaattttatttttagtccct-acaaaataaaatcacactttttagtccctttaaaattttccatc 4058956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 10117895 - 10117968
Alignment:
Q  117 cctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    |||||||||| ||| ||||||||||| |  ||  |||||||||||||||||| ||||||||| ||||||||||||    
T  10117895 cctataaatatttaaaatttcattttta-acctctataaaataaaatcgcactttttagtccttgtaaaattttc 10117968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 7466551 - 7466452
Alignment:
Q  96 ggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgt-aaaattttcaat 194  Q
    |||||||||||||| ||  ||| |||||||| |||||||||  |||| | ||| ||||||||||||||| ||| ||||||||||| | ||||||||||||    
T  7466551 ggttaattaagtaa-atggtccttataaatatttagaattttgtttttagtcc-ttataaaataaaatcacactttttagtccctataaaaattttcaat 7466454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 29681594 - 29681699
Alignment:
Q  89 attatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaatt 188  Q
    ||||||||||||||||||||| ||  ||||| |||||| | |||||||  |||| | ||||| ||||||||||||  ||| ||||||||| | |||||||    
T  29681594 attatagggttaattaagtaa-atggtccctgtaaatattcagaattttgtttttagtccct-ataaaataaaattacactttttagtccttataaaatt 29681691  T
Q  189 ttcaatca 196  Q
    ||| ||||    
T  29681692 ttccatca 29681699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 6153799 - 6153845
Alignment:
Q  151 tataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||||||||| ||||||||| | |||||||||| |||||    
T  6153799 tataaaataaaatcgcactttttagtccttataaaattttccatcaa 6153845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 6366725 - 6366625
Alignment:
Q  95 gggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaat 194  Q
    ||||||||||||||| ||  |||||||||||| | ||||||| ||||| | ||||| | ||||||||||| ||| |||||||| || ||||| |||| ||    
T  6366725 gggttaattaagtaa-atggtccctataaatattcagaattttatttttagtccct-acaaaataaaatcacactttttagtctctataaaaatttccat 6366628  T
Q  195 caa 197  Q
    |||    
T  6366627 caa 6366625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 9242396 - 9242477
Alignment:
Q  115 tccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| |||||||||  |||| | ||||| | ||||||||||| ||| ||||||||||| ||| |||||| |||||    
T  9242396 tccctataaatatttagaattttgtttttagtccct-acaaaataaaatcacactttttagtccctataacattttccatcaa 9242477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 34556646 - 34556551
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    ||||||||||||||||| ||  |||||||||||| | ||||||| ||||| | |||| || ||||||||||| ||| ||||||||||||| | ||||||    
T  34556646 tagggttaattaagtaa-atggtccctataaatattaagaattttatttttagtccc-tacaaaataaaatcacac-ttttagtccctgtgacattttc 34556551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 13685536 - 13685573
Alignment:
Q  154 aaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  13685536 aaaataaaatcacactttttagtccctgtaaaattttc 13685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 32132033 - 32132078
Alignment:
Q  151 tataaaataaaatcgcacattttagtccctgtaaaattttcaatca 196  Q
    ||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  32132033 tataaaataaaatcgcactatttagtctctgtaaaattttccatca 32132078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 26629429 - 26629527
Alignment:
Q  91 tatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaatttt 190  Q
    ||||||||||||||||||| ||  |||||||||||| | | ||||||||||| | ||||| | ||||||||||| ||| ||||||||||||| |||||||    
T  26629429 tatagggttaattaagtaa-atggtccctataaatattcaaaatttcatttttagtccct-acaaaataaaatcacactttttagtccctgtgaaatttt 26629526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 33181509 - 33181609
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaa 193  Q
    ||||| |||||||||| || ||||||||||||| | |||||||||| || | ||||| | ||||||||||| ||| ||||||||||| |||||||||| |    
T  33181509 agggtcaattaagtaa-atgatccctataaatattcagaatttcatatttaatccctaa-aaaataaaatcacactttttagtccctataaaattttcca 33181606  T
Q  194 tca 196  Q
    |||    
T  33181607 tca 33181609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 33230481 - 33230382
Alignment:
Q  95 gggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaat 194  Q
    |||| |||||||||| || ||||||||||||| | |||||||||| || | ||||| | ||||||||||| ||| ||||||||||| |||||||||| ||    
T  33230481 gggtcaattaagtaa-atgatccctataaatattcagaatttcatatttaatccctaa-aaaataaaatcacactttttagtccctataaaattttccat 33230384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 2717399 - 2717296
Alignment:
Q  91 tatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaatttt 190  Q
    |||| |||||||||||||| ||  |||||||||||| ||| ||||||||||| | | || |||||||||| |||| || ||||||||| | |||||||||    
T  2717399 tatatggttaattaagtaa-atagtccctataaatatttataatttcatttttaattcc-tataaaataatatcgtactttttagtccttataaaatttt 2717302  T
Q  191 caatca 196  Q
    | ||||    
T  2717301 ccatca 2717296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 8459635 - 8459529
Alignment:
Q  88 aattatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaat 187  Q
    |||| ||||||||||||||||| ||  |||||||||||| | |||||||  |||| | ||||| | ||||||||||| ||| ||||||||||| ||| ||    
T  8459635 aattttagggttaattaagtaa-atggtccctataaatattcagaattttgtttttaatccct-acaaaataaaatcacactttttagtccctataagat 8459538  T
Q  188 tttcaatca 196  Q
    |||| ||||    
T  8459537 tttccatca 8459529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 48148762 - 48148864
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttca 192  Q
    ||||||||||||||||| ||| |||||||||||| | | |||||  |||| | ||||| | ||||||||||| ||  ||||||||||| ||||||||||     
T  48148762 tagggttaattaagtaa-attgtccctataaatattcataattttgtttttagtccct-acaaaataaaatcacagtttttagtccctataaaattttcc 48148859  T
Q  193 atcaa 197  Q
    |||||    
T  48148860 atcaa 48148864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 54682920 - 54683014
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaatttt 190  Q
    |||||||||||||||| ||| |||||||||||| | |||||||  |||| | ||||  ||||||||||||  ||| ||||||||||| |||||||||    
T  54682920 agggttaattaagtaa-attgtccctataaatattcagaatttagtttttagtccca-ataaaataaaattacactttttagtccctataaaatttt 54683014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 23256976 - 23257057
Alignment:
Q  115 tccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| |||||||||  |||| | ||||| | ||||||||||| ||| ||||||||| | |||||||||| |||||    
T  23256976 tccctataaatatttagaattttgtttttagtccctaa-aaaataaaatcacactttttagtccttataaaattttccatcaa 23257057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 27704769 - 27704688
Alignment:
Q  115 tccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| |||||||||  |||| | ||||| | ||||||||||| ||| ||||||||| | |||||||||| |||||    
T  27704769 tccctataaatatttagaattttgtttttagtccctaa-aaaataaaatcacactttttagtccttataaaattttccatcaa 27704688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 37133500 - 37133412
Alignment:
Q  96 ggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaa 186  Q
    |||||||||||||| ||  |||||||||||| |||||||||  |||| |||||| || ||||||||||| ||| |||||||| || |||||    
T  37133500 ggttaattaagtaa-atggtccctataaatatttagaattttgtttttattccc-tacaaaataaaatcacactttttagtctctataaaa 37133412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 43359523 - 43359620
Alignment:
Q  97 gttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatca 196  Q
    ||||||||||||| ||  || ||||||||| ||||||||||||||| | ||| ||| ||||||||||||||||||||||| | |||| ||||||| ||||    
T  43359523 gttaattaagtaa-atggtcgctataaatatttagaatttcattttcagtcc-ttacaaaataaaatcgcacattttagttcatgtataattttccatca 43359620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 40934443 - 40934542
Alignment:
Q  96 ggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatc 195  Q
    |||||||||||||| ||  ||||| |||||| | ||||||| ||||| | ||||| ||||||||||||| ||| ||||||||||| |||||||||| |||    
T  40934443 ggttaattaagtaa-atggtccctgtaaatattcagaattttatttttagtccct-ataaaataaaatcacactttttagtccctataaaattttccatc 40934540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 40081947 - 40081845
Alignment:
Q  92 atagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    |||||||||||||||||| ||  |||||||||||| | ||||||| ||||| | ||||| | ||||||||||| ||  ||||||||||| ||||||||||    
T  40081947 atagggttaattaagtaa-atggtccctataaatattcagaattttatttttagtccct-acaaaataaaatcacattttttagtccctataaaattttc 40081850  T
Q  192 aatca 196  Q
     ||||    
T  40081849 catca 40081845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 8238685 - 8238734
Alignment:
Q  148 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||| |||||    
T  8238685 ccttataaaataaaatcacactttttagtccctataaaattttccatcaa 8238734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 41506600 - 41506505
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    |||||||||||||||| || ||||||||||||| | |||||||  |||| | ||||| ||||||||||||| ||| |||||||| |  ||||||||||    
T  41506600 agggttaattaagtaa-atgatccctataaatattcagaattttgtttttagtccct-ataaaataaaatcacactttttagtctcaataaaattttc 41506505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 29368836 - 29368931
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    ||||||||||||||||| ||| |||||||||||| | | |||||  |||| | |||||   ||||||||||||||| |||||||| || ||||||||||    
T  29368836 tagggttaattaagtaa-attgtccctataaatattcaaaattttgtttttagtccct--caaaataaaatcgcaccttttagtctctataaaattttc 29368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 25513645 - 25513550
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    |||||||||||||||| ||  |||||||||||| | |||||||  |||| | ||||  ||||||||||||| ||| ||||||||||||| | ||||||    
T  25513645 agggttaattaagtaa-atggtccctataaatattcagaattttgtttttagtcccc-ataaaataaaatcacactttttagtccctgtgacattttc 25513550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 37220456 - 37220349
Alignment:
Q  88 aattatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaat 187  Q
    ||||||||||||||||||||  | | ||||||||||||| |  ||||||  |||| | ||||| | |||| |||||| ||| ||||||||||| ||||||    
T  37220456 aattatagggttaattaagtttt-taatccctataaatattccgaattttgtttttaatccct-acaaaagaaaatcacactttttagtccctataaaat 37220359  T
Q  188 tttcaatcaa 197  Q
    |||| |||||    
T  37220358 tttccatcaa 37220349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 38444464 - 38444505
Alignment:
Q  156 aataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    ||||||||| ||| |||||||||||||||||||||| |||||    
T  38444464 aataaaatcacactttttagtccctgtaaaattttccatcaa 38444505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 47764659 - 47764610
Alignment:
Q  148 ccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    ||||| ||||||||||| ||| ||||||||||| |||||||||| |||||    
T  47764659 ccttacaaaataaaatcacactttttagtccctataaaattttccatcaa 47764610  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 3308679 - 3308611
Alignment:
Q  117 cctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaa 186  Q
    |||||||||| | ||||||||||||| | ||| ||| ||||||||||||||||||||||||| |||||||    
T  3308679 cctataaatattcagaatttcatttttagtcc-ttagaaaataaaatcgcacattttagtccatgtaaaa 3308611  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 34578300 - 34578399
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaa 193  Q
    |||||||||||||||| ||  | |||||||||| | |||||||  |||| || ||  |||||||||||||| ||| ||||||||||| |||||||||| |    
T  34578300 agggttaattaagtaa-atggttcctataaatattcagaatttttttttaatccc--tataaaataaaatcacactttttagtccctataaaattttcca 34578396  T

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Target: scaffold0223 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 28126 - 28201
Alignment:
Q  115 tccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    |||||||||||| ||| ||||| ||||| | ||||| | |||||||||| |||| ||||||||||||||||||||||    
T  28126 tccctataaatatttaaaattttatttttagtccct-acaaaataaaattgcactttttagtccctgtaaaattttc 28201  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 38556347 - 38556245
Alignment:
Q  92 atagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    |||||||||||||||||| ||| |||||||||||| | |||||||   ||| | ||||| | |||||||||||| || ||||||||||| ||||||||||    
T  38556347 atagggttaattaagtaa-attgtccctataaatattcagaattttgattttagtccct-acaaaataaaatcgtactttttagtccctataaaattttc 38556250  T
Q  192 aatca 196  Q
     ||||    
T  38556249 catca 38556245  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 11723653 - 11723571
Alignment:
Q  115 tccctataaataatt-agaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttcaatcaa 197  Q
    |||||||||||| || |||||||  |||| | ||||| ||||||||||||| ||| |||||||||||||||||||||| |||||    
T  11723653 tccctataaatatttcagaattttgtttttagtccct-ataaaataaaatcacactttttagtccctgtaaaattttccatcaa 11723571  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 39134521 - 39134560
Alignment:
Q  151 tataaaataaaatcgcacattttagtccctgtaaaatttt 190  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  39134521 tataaaataaaatcacacattttagtccctataaaatttt 39134560  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 6334105 - 6334201
Alignment:
Q  93 tagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccctgtaaaattttc 191  Q
    ||||||||||||||||| ||  ||| |||||||| | ||||||| ||||| | ||| ||| ||||||||||| ||| ||||||||||| ||| ||||||    
T  6334105 tagggttaattaagtaa-atggtccttataaatattcagaattttatttttagtcc-ttacaaaataaaatcacactttttagtccctataagattttc 6334201  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 43927826 - 43927758
Alignment:
Q  94 agggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatc 164  Q
    |||||||||||||||| || ||||||||||||| | ||||||| ||||| | |||| ||||||||||||||    
T  43927826 agggttaattaagtaa-atgatccctataaatattcagaattttatttttagtccc-tataaaataaaatc 43927758  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 12262721 - 12262824
Alignment:
Q  81 ataaatcaattatagggttaattaagtaatattatccctataaataattagaatttcattttgattcccttataaaataaaatcgcacattttagtccct 180  Q
    |||||| ||||  |||||||||||||||| ||  |||||||||||| |||||||||  |||| | |||| || ||||||||||  ||| |||||||||||    
T  12262721 ataaattaatttaagggttaattaagtaa-atggtccctataaatatttagaattttgtttttaatccc-tacaaaataaaataacactttttagtccct 12262818  T
Q  181 gtaaaa 186  Q
     |||||    
T  12262819 ataaaa 12262824  T

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