View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_23 (Length: 338)
Name: NF16661_high_23
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 38 - 319
Target Start/End: Original strand, 31770219 - 31770501
Alignment:
| Q |
38 |
atacaaattaacataacatgagtcataaattaaaagttactaacacttcaacaactactatatattccatctcataatattttcactcattttttcctaa |
137 |
Q |
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| T |
31770219 |
atacaaattaacataacatgagtcataaattaaaagttactaacacttcaacaactactatatattccatctcataatattttcactcattttttcctaa |
31770318 |
T |
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| Q |
138 |
aa-aactgagttgcacacagattttcctacagaaatgtcagaggtaaaagaccctgcgataaagctctttggcaggacaattccgcttcttccactgatc |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770319 |
aaaaactgagttgcacacagattttcctacagaaatgtcagaggtaaaagaccctgcgataaagctctttggcaggacaattccgcttcttccactgatc |
31770418 |
T |
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| Q |
237 |
atccctgccaatgactcttcatctccctcttcttctccgccagaattcacctctgcaatacaacatgaaactgaggtacgtgc |
319 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770419 |
atccctgccaacgactcttcatttccctcttcttctccgccagaattcacctctgcaatacaacatgaaactgaggtacgtgc |
31770501 |
T |
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