View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16661_high_25 (Length: 324)
Name: NF16661_high_25
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 22459101 - 22458799
Alignment:
| Q |
1 |
agtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22459101 |
agtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaat |
22459002 |
T |
|
| Q |
101 |
tttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22459001 |
tttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccat |
22458902 |
T |
|
| Q |
201 |
tgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458901 |
tgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtg |
22458802 |
T |
|
| Q |
301 |
tct |
303 |
Q |
| |
|
||| |
|
|
| T |
22458801 |
tct |
22458799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 22482082 - 22481780
Alignment:
| Q |
1 |
agtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22482082 |
agtggaaaagaacatagcttgcatatccaatcatctttggaacaagggtcaagcagtactgcaacaaacttcaacatggagaaccttcgaaaggctcaat |
22481983 |
T |
|
| Q |
101 |
tttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22481982 |
tttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccat |
22481883 |
T |
|
| Q |
201 |
tgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481882 |
tgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtg |
22481783 |
T |
|
| Q |
301 |
tct |
303 |
Q |
| |
|
||| |
|
|
| T |
22481782 |
tct |
22481780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 22468481 - 22468266
Alignment:
| Q |
80 |
agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga |
179 |
Q |
| |
|
||||||||||| | |||| ||||| ||| ||||||| |||| |||| || ||||||| ||| || ||| | | ||||||| ||||||||||| |||| |
|
|
| T |
22468481 |
agaaccttcgagacgctccattttatatggatgaagctgatcttgtgggatttgaagagccacgagacaaattgattgatttgttggtagagggaagagc |
22468382 |
T |
|
| Q |
180 |
agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgat |
279 |
Q |
| |
|
|| || ||| ||||| |||| ||||||| |||||||| |||||||| ||| | || ||||| ||||||||| | | ||| |||||||||| |||||| |
|
|
| T |
22468381 |
agagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgttaaacattttgat |
22468282 |
T |
|
| Q |
280 |
tgtcatgtatggatca |
295 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22468281 |
tgtcatgtatggatca |
22468266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 22431670 - 22431462
Alignment:
| Q |
94 |
gctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattg |
193 |
Q |
| |
|
|||| ||||| ||| ||||||| ||||||||| || ||||||| |||||| ||||| | ||||||||| ||||| | | | ||||| || |||| | | |
|
|
| T |
22431670 |
gctccattttatatggatgaagctgatgttgtgggatttgaagagccaagagacatattgattgattggctggtaaatggaaaagaagagctcacagtgg |
22431571 |
T |
|
| Q |
194 |
tcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggat |
293 |
Q |
| |
|
|| ||||||| |||| |||||||| |||||||| ||||| | ||||| ||||||||| | |||| | || |||||||||||||||||| | ||||||| |
|
|
| T |
22431570 |
tctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggat |
22431472 |
T |
|
| Q |
294 |
cagagtgtct |
303 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22431471 |
cacagtgtct |
22431462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 22368339 - 22368230
Alignment:
| Q |
186 |
cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcat |
285 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||| |||||||| ||||| || ||||| ||||||||| | | ||| ||||||||||||||||||||| | |
|
|
| T |
22368339 |
cacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgttaaacactttgattgtcgt |
22368240 |
T |
|
| Q |
286 |
gtatggatca |
295 |
Q |
| |
|
||||||||| |
|
|
| T |
22368239 |
ttatggatca |
22368230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 295
Target Start/End: Complemental strand, 22630972 - 22630757
Alignment:
| Q |
80 |
agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga |
179 |
Q |
| |
|
||||||||||| | |||| ||| | | | ||||||| ||||||||| |||||||| | ||| || ||| | | ||||||||| || |||||| |||| |
|
|
| T |
22630972 |
agaaccttcgagatgctccattgtatttggatgaagctgatgttgtgggctttgacgagccacgagacaaattgattgattggctgatagagggaagagc |
22630873 |
T |
|
| Q |
180 |
agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgat |
279 |
Q |
| |
|
|| | |||| ||||| | |||||||||| |||||||| || ||||| |||||||| ||||| |||||||| | ||| ||||||||||||||||| |
|
|
| T |
22630872 |
agaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaacactttgat |
22630773 |
T |
|
| Q |
280 |
tgtcatgtatggatca |
295 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
22630772 |
tgtcatgaatggatca |
22630757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 22358428 - 22358322
Alignment:
| Q |
187 |
acaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatg |
286 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| | ||| |||| |||||||||||| ||| || |
|
|
| T |
22358428 |
acaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtg |
22358329 |
T |
|
| Q |
287 |
tatggat |
293 |
Q |
| |
|
||||||| |
|
|
| T |
22358328 |
tatggat |
22358322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 22632398 - 22632204
Alignment:
| Q |
80 |
agaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagaga |
179 |
Q |
| |
|
||||||||||| | |||| ||||| ||| ||||||| ||||||||| || ||||||| |||| | | | ||||||| ||||| ||||||||| |||| |
|
|
| T |
22632398 |
agaaccttcgagacgctccattttatatggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagggaagagc |
22632299 |
T |
|
| Q |
180 |
agtgcacacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacact |
274 |
Q |
| |
|
|| | |||| ||||| ||||| |||||| |||||||| || ||||| ||||| || ||||| ||||||||| | |||||||||||||||| |
|
|
| T |
22632298 |
agatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgttaaacact |
22632204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 22635929 - 22635823
Alignment:
| Q |
187 |
acaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatg |
286 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||| ||||| |||||||| ||||||||| | ||| |||| ||| |||||||||||| || |
|
|
| T |
22635929 |
acaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtg |
22635830 |
T |
|
| Q |
287 |
tatggat |
293 |
Q |
| |
|
||||||| |
|
|
| T |
22635829 |
tatggat |
22635823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 22443243 - 22443119
Alignment:
| Q |
109 |
gatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaa |
208 |
Q |
| |
|
||||||| |||| |||| |||||||||| |||||| ||| | | ||||||| ||||||||||| ||||||| | |||| ||||| |||||||||||| |
|
|
| T |
22443243 |
gatgaagctgatattgttggctttgaagagccaagagacaaattgattgatttgttggtagagggaagagaagaccgcacagttgtctccattgttggaa |
22443144 |
T |
|
| Q |
209 |
agggaggacaaggaaaaacaactct |
233 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
22443143 |
tgggaggattgggaaaaaccactct |
22443119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 29611088 - 29611001
Alignment:
| Q |
81 |
gaaccttcgaaaggctcaattttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggta |
168 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||| ||| |||| ||||||||||| |||||| | ||| ||||||||||| ||||| |
|
|
| T |
29611088 |
gaaccttcgaaaggctccattttacatggatgaagctgacgttgcaggctttgaagagccaagagaaatattaattgattggctggta |
29611001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University