View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16661_high_28 (Length: 307)
Name: NF16661_high_28
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 3125661 - 3125936
Alignment:
| Q |
14 |
agacatcattgtccataaaagtccttattgcaagtccatgaatccacttggccatccggttaaccgataaatcagcgagagcagtaattacagccactaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3125661 |
agacatcattgtccataaaagtccttattgcaagtccatgaatccacttggccatccggttaaccgataaatcagcgagagcagtaattacagccactaa |
3125760 |
T |
|
| Q |
114 |
agtaaagcagtcaggtttaacttcttgagattgcatcacacaaaacagatataaagcctcattaacgcatccattttgagcataacctaatatcatggca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3125761 |
agtaaagcagtcaggtttaacttcttgagattgcatcacacaaaacagatataaagcctcattaacgcatccattttgagcataacctaatatcatggca |
3125860 |
T |
|
| Q |
214 |
ttccacgtgacgtttgttttcttcttcaaattctcaaagattgaggctgcaaggtcaactctcttacactttgaat |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3125861 |
ttccacgtgacgtttgttttcttcttcaaattctcaaagattgaggctgcaaggtcaactctcttacactttgaat |
3125936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 289
Target Start/End: Complemental strand, 3129489 - 3129239
Alignment:
| Q |
39 |
tattgcaagtccatgaatccacttggccatccggttaaccgataaatcagcgagagcagtaattacagccactaaagtaaagcagtcaggtttaacttct |
138 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| ||||||||||||| || |||||||| || ||| ||| || |||||| | || ||||||| || |
|
|
| T |
3129489 |
tattgcaagtccgtgaatccacttagcctgacgggtaaccgataaatctgctagagcagtgatcacactcacaaatgtaaaggaatcgggtttaatacct |
3129390 |
T |
|
| Q |
139 |
tgagattgcatcacacaaaacagatataaagcctcattaacgcatccattttgagcataacctaatatcatggcattccacgtgacgtttgttttcttct |
238 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| ||||| || || ||||| || |||||||| ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
3129389 |
tgagattgcatagtacagaacagattcaaagcttcatttacacaaccattctgtgcataacccaatatcatggcattccatgtgacgtttgttttc-cct |
3129291 |
T |
|
| Q |
239 |
tc-aaattctcaaagattgaggctgcaaggtcaactctcttacactttgaat |
289 |
Q |
| |
|
|| ||||| ||||| | || ||||||| |||||||| ||||||||||||| |
|
|
| T |
3129290 |
tctaaattatcaaataccgaagctgcaatatcaactcttttacactttgaat |
3129239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University