View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16661_high_30 (Length: 292)
Name: NF16661_high_30
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 27783262 - 27783001
Alignment:
| Q |
18 |
atagtaggtaacagaatctcaatttacatgagtatggagcaagaggggcacgtggagtgggtatgttctctcataatgaacttacatttcgctcaagaac |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27783262 |
atagtaggtaacagaatctcagtttacatgagtatggaggaagaggggtacgtggagtgggtatgttctctcataatgaacttacatttcgctcaagaac |
27783163 |
T |
|
| Q |
118 |
cacacgacgctcgtacaatgcttcctttcgtgtttccacataagactgcagttttacatttatttttacctgcaagaggaaatgaaaatggacaattgat |
217 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27783162 |
cagacgacgctcgtgcaatgcttcctttcgtgtttccacataagactgcagctttgcatttacttttacctgaaagaggaaatgaaaatggacaattgat |
27783063 |
T |
|
| Q |
218 |
tcttgtacacagacaaggtaaaattgagaaaaccaaggtttaacctcctctgcaatttgcct |
279 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27783062 |
tcttgtacacagacaaagtaaaattgagaaaaccaaggtttaacctcctctgcaatttgcct |
27783001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University