View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_32 (Length: 276)

Name: NF16661_high_32
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_32
NF16661_high_32
[»] chr7 (37 HSPs)
chr7 (33-146)||(44896046-44896159)
chr7 (25-137)||(41224787-41224899)
chr7 (32-137)||(29314580-29314685)
chr7 (31-130)||(29006345-29006444)
chr7 (31-130)||(29007150-29007249)
chr7 (67-137)||(33687694-33687764)
chr7 (32-80)||(4985395-4985443)
chr7 (32-80)||(4989493-4989541)
chr7 (47-105)||(25137426-25137483)
chr7 (47-100)||(30414195-30414247)
chr7 (27-80)||(45887981-45888034)
chr7 (32-100)||(29315293-29315360)
chr7 (32-80)||(47331954-47332002)
chr7 (33-80)||(46757378-46757425)
chr7 (33-82)||(669102-669151)
chr7 (33-134)||(24322299-24322399)
chr7 (55-100)||(42901118-42901163)
chr7 (38-79)||(48259820-48259861)
chr7 (61-105)||(25137902-25137946)
chr7 (60-100)||(33140276-33140316)
chr7 (30-82)||(37468907-37468959)
chr7 (40-80)||(45887286-45887326)
chr7 (61-100)||(4180320-4180359)
chr7 (61-100)||(20560263-20560302)
chr7 (32-83)||(41194512-41194563)
chr7 (61-95)||(33686953-33686987)
chr7 (32-82)||(37864306-37864356)
chr7 (32-82)||(38778853-38778903)
chr7 (34-100)||(41224110-41224175)
chr7 (33-82)||(668179-668228)
chr7 (33-82)||(17145622-17145671)
chr7 (33-82)||(37469004-37469053)
chr7 (33-82)||(38072290-38072339)
chr7 (33-82)||(38779562-38779611)
chr7 (68-105)||(42900681-42900718)
chr7 (60-100)||(4179663-4179703)
chr7 (32-80)||(44909360-44909408)
[»] chr8 (18 HSPs)
chr8 (35-146)||(41348146-41348257)
chr8 (33-146)||(35759174-35759287)
chr8 (33-137)||(41092172-41092276)
chr8 (60-146)||(30272125-30272211)
chr8 (68-146)||(36935666-36935744)
chr8 (60-143)||(42573606-42573689)
chr8 (75-137)||(42111556-42111618)
chr8 (32-82)||(34992263-34992313)
chr8 (60-100)||(14197685-14197725)
chr8 (61-100)||(30846043-30846082)
chr8 (31-82)||(41859308-41859359)
chr8 (33-82)||(27918046-27918095)
chr8 (67-100)||(30846478-30846511)
chr8 (33-82)||(32536708-32536757)
chr8 (33-146)||(43924490-43924602)
chr8 (220-252)||(1488302-1488334)
chr8 (29-81)||(25876517-25876569)
chr8 (67-135)||(35387412-35387479)
[»] chr6 (24 HSPs)
chr6 (40-146)||(1034728-1034834)
chr6 (40-134)||(10608267-10608361)
chr6 (40-137)||(930930-931028)
chr6 (67-146)||(18605035-18605114)
chr6 (51-137)||(28534784-28534869)
chr6 (47-100)||(7635138-7635190)
chr6 (47-100)||(18290477-18290529)
chr6 (61-100)||(7635617-7635656)
chr6 (38-105)||(10607406-10607472)
chr6 (33-82)||(3543062-3543111)
chr6 (89-146)||(9428058-9428115)
chr6 (47-100)||(18290229-18290281)
chr6 (55-100)||(28983274-28983319)
chr6 (55-100)||(34717737-34717782)
chr6 (30-82)||(7193335-7193387)
chr6 (66-146)||(34034201-34034280)
chr6 (35-82)||(3542816-3542863)
chr6 (46-80)||(9427358-9427392)
chr6 (55-105)||(34717263-34717313)
chr6 (55-100)||(2924954-2924999)
chr6 (47-100)||(12999459-12999511)
chr6 (55-100)||(19062805-19062850)
chr6 (33-82)||(33480627-33480676)
chr6 (33-101)||(24125972-24126039)
[»] chr3 (33 HSPs)
chr3 (32-143)||(46719660-46719771)
chr3 (32-137)||(38741262-38741367)
chr3 (66-137)||(26837141-26837212)
chr3 (47-100)||(24394716-24394768)
chr3 (47-105)||(20586086-20586143)
chr3 (47-100)||(5113212-5113264)
chr3 (47-100)||(20586566-20586618)
chr3 (47-100)||(26006160-26006212)
chr3 (47-100)||(36992155-36992207)
chr3 (47-100)||(37017595-37017647)
chr3 (72-137)||(37999503-37999568)
chr3 (47-100)||(45000809-45000861)
chr3 (66-100)||(5113690-5113724)
chr3 (47-105)||(45000329-45000386)
chr3 (72-146)||(46739656-46739729)
chr3 (47-100)||(929925-929977)
chr3 (55-100)||(930415-930460)
chr3 (55-100)||(11442137-11442182)
chr3 (55-100)||(32474444-32474489)
chr3 (47-100)||(43104759-43104811)
chr3 (55-100)||(43521098-43521143)
chr3 (32-104)||(37105055-37105126)
chr3 (33-104)||(21811879-21811949)
chr3 (32-82)||(36750436-36750486)
chr3 (33-82)||(19132811-19132860)
chr3 (67-100)||(24394280-24394313)
chr3 (55-100)||(32473782-32473827)
chr3 (33-82)||(38923664-38923713)
chr3 (68-100)||(11441683-11441715)
chr3 (60-100)||(21166138-21166178)
chr3 (60-100)||(38000274-38000314)
chr3 (66-106)||(42423203-42423242)
chr3 (220-252)||(50306340-50306372)
[»] chr4 (36 HSPs)
chr4 (32-146)||(49399497-49399611)
chr4 (34-143)||(52758648-52758757)
chr4 (60-146)||(53289500-53289586)
chr4 (40-134)||(11680283-11680377)
chr4 (40-134)||(11688562-11688656)
chr4 (40-134)||(12590150-12590244)
chr4 (33-137)||(31634103-31634207)
chr4 (40-134)||(25655586-25655680)
chr4 (40-134)||(46764259-46764353)
chr4 (32-130)||(31910553-31910651)
chr4 (77-146)||(3619042-3619111)
chr4 (61-146)||(39413557-39413642)
chr4 (33-80)||(38014923-38014970)
chr4 (47-100)||(5235388-5235440)
chr4 (47-100)||(20174984-20175036)
chr4 (32-105)||(46765145-46765217)
chr4 (38-80)||(25370511-25370553)
chr4 (67-100)||(6934484-6934517)
chr4 (55-100)||(19860351-19860396)
chr4 (32-101)||(47377579-47377647)
chr4 (31-82)||(26611282-26611333)
chr4 (47-126)||(32292171-32292249)
chr4 (85-132)||(47523270-47523317)
chr4 (32-82)||(11417686-11417736)
chr4 (32-82)||(29651331-29651381)
chr4 (47-105)||(39412779-39412836)
chr4 (33-67)||(55864259-55864293)
chr4 (32-105)||(11681251-11681323)
chr4 (32-105)||(11689530-11689602)
chr4 (32-105)||(12589286-12589358)
chr4 (37-82)||(38143736-38143781)
chr4 (33-74)||(49398412-49398453)
chr4 (61-105)||(3167454-3167498)
chr4 (38-106)||(3847891-3847959)
chr4 (60-100)||(19860854-19860894)
chr4 (90-130)||(54007629-54007669)
[»] scaffold0155 (1 HSPs)
scaffold0155 (33-137)||(17339-17443)
[»] chr1 (26 HSPs)
chr1 (34-137)||(49611504-49611607)
chr1 (47-146)||(32538438-32538536)
chr1 (32-92)||(45065375-45065435)
chr1 (47-105)||(38468920-38468977)
chr1 (47-100)||(43755863-43755915)
chr1 (32-100)||(45064685-45064752)
chr1 (47-105)||(32537659-32537716)
chr1 (67-105)||(38469262-38469300)
chr1 (55-100)||(2820979-2821024)
chr1 (67-104)||(17151857-17151894)
chr1 (55-100)||(28371685-28371730)
chr1 (60-100)||(12800452-12800492)
chr1 (18-82)||(43737977-43738041)
chr1 (67-106)||(33630510-33630549)
chr1 (31-106)||(51987825-51987900)
chr1 (67-97)||(43756332-43756362)
chr1 (32-82)||(51974436-51974486)
chr1 (33-82)||(16270207-16270256)
chr1 (47-104)||(17151016-17151072)
chr1 (33-82)||(23440864-23440913)
chr1 (55-100)||(48594207-48594252)
chr1 (55-100)||(48598818-48598863)
chr1 (60-100)||(2821471-2821511)
chr1 (220-252)||(3788634-3788666)
chr1 (32-80)||(8561737-8561785)
chr1 (60-100)||(33631072-33631112)
[»] chr2 (29 HSPs)
chr2 (33-130)||(40992222-40992319)
chr2 (33-137)||(16426553-16426657)
chr2 (76-146)||(29921471-29921541)
chr2 (47-104)||(6610021-6610077)
chr2 (47-104)||(15562018-15562074)
chr2 (47-100)||(16992373-16992426)
chr2 (47-100)||(16903879-16903931)
chr2 (47-100)||(30899404-30899456)
chr2 (47-105)||(37996560-37996617)
chr2 (55-100)||(3705358-3705403)
chr2 (47-100)||(6609565-6609617)
chr2 (47-100)||(7994069-7994121)
chr2 (67-100)||(7994555-7994588)
chr2 (72-133)||(14487969-14488030)
chr2 (33-82)||(14573261-14573310)
chr2 (47-100)||(16903412-16903464)
chr2 (31-104)||(30545413-30545485)
chr2 (31-80)||(41984725-41984774)
chr2 (66-137)||(5006252-5006323)
chr2 (61-100)||(15561568-15561607)
chr2 (32-82)||(21471016-21471066)
chr2 (67-100)||(3705806-3705839)
chr2 (33-82)||(21471953-21472002)
chr2 (33-106)||(30544727-30544799)
chr2 (91-132)||(36476696-36476737)
chr2 (32-104)||(2650228-2650299)
chr2 (220-252)||(26021728-26021760)
chr2 (32-80)||(41043329-41043377)
chr2 (32-104)||(44154275-44154347)
[»] scaffold0180 (1 HSPs)
scaffold0180 (56-146)||(23027-23117)
[»] chr5 (28 HSPs)
chr5 (47-137)||(42654851-42654939)
chr5 (47-104)||(8320889-8320945)
chr5 (33-100)||(16971015-16971081)
chr5 (47-100)||(3595791-3595843)
chr5 (47-100)||(7858341-7858393)
chr5 (47-100)||(8321369-8321421)
chr5 (29-82)||(12190157-12190210)
chr5 (47-100)||(12330644-12330696)
chr5 (29-134)||(33283971-33284075)
chr5 (32-80)||(26268343-26268391)
chr5 (33-80)||(2319266-2319313)
chr5 (32-82)||(36626629-36626679)
chr5 (47-100)||(12330162-12330214)
chr5 (32-80)||(2319968-2320016)
chr5 (61-100)||(3596275-3596314)
chr5 (61-100)||(24027668-24027707)
chr5 (33-108)||(27123581-27123656)
chr5 (32-82)||(8204119-8204169)
chr5 (67-97)||(31078489-31078519)
chr5 (33-82)||(686417-686465)
chr5 (33-82)||(15184016-15184065)
chr5 (55-100)||(16997011-16997056)
chr5 (47-100)||(24027201-24027253)
chr5 (67-100)||(29759630-29759663)
chr5 (37-134)||(33283169-33283265)
chr5 (32-104)||(2458332-2458403)
chr5 (60-100)||(5620851-5620891)
chr5 (69-97)||(7858804-7858832)
[»] scaffold0129 (1 HSPs)
scaffold0129 (33-108)||(42486-42561)
[»] scaffold0508 (1 HSPs)
scaffold0508 (47-100)||(4147-4199)
[»] scaffold0311 (1 HSPs)
scaffold0311 (32-82)||(159-209)
[»] scaffold0041 (1 HSPs)
scaffold0041 (33-82)||(27574-27623)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-100)||(61588-61640)
[»] scaffold0006 (1 HSPs)
scaffold0006 (61-97)||(202268-202304)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 44896046 - 44896159
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44896046 ggtgccgtttaatttgggaaagactagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 44896145  T
Q  133 caacatcaaatttt 146  Q
    ||||||||||||||    
T  44896146 caacatcaaatttt 44896159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 41224899 - 41224787
Alignment:
Q  25 tctcttcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatca 124  Q
    |||||| |||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  41224899 tctcttaaggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatca 41224800  T
Q  125 tggtctctcaaca 137  Q
    |||||| ||||||    
T  41224799 tggtctttcaaca 41224787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 29314580 - 29314685
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctc 131  Q
    ||||||||||||||||| |||| ||| ||||||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||     
T  29314580 aggtgccatttaatttgagaaaggcttgtttttttccaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtctt 29314679  T
Q  132 tcaaca 137  Q
    ||||||    
T  29314680 tcaaca 29314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 29006345 - 29006444
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatggtc 129  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  29006345 caggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtac-caattttatcatggtc 29006443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 29007249 - 29007150
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatggtc 129  Q
    |||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||    
T  29007249 caggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtac-taattttatcatggtc 29007151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 33687764 - 33687694
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    |||||||| |||||||||||||||||||||  ||||| ||||| ||| ||| |||||||||||||||||||    
T  33687764 ccaccatgagaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaaca 33687694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 4985443 - 4985395
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4985443 aggtgacatttaatttgggaaatgctagttttttcccaccatgggaaag 4985395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 4989541 - 4989493
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4989541 aggtgacatttaatttgggaaatgctagttttttcccaccatgggaaag 4989493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 25137426 - 25137483
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  25137426 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagatcaaat 25137483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 30414195 - 30414247
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  30414195 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 30414247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 45888034 - 45887981
Alignment:
Q  27 tcttcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||| ||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  45888034 tctttaggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 45887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 29315360 - 29315293
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||| |||||||||||||||  ||||||||| |||| ||||||||||| || |||||||||||||||    
T  29315360 aggtgcaatttaatttgggaaagactagttttttcccatcatgggaaagtaag-ttttaaccattagat 29315293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 47332002 - 47331954
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  47332002 aggtgacatttaatttgggaaaggctagttttttcccaccatgggaaag 47331954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 46757425 - 46757378
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  46757425 ggtggcatttaatttgggaaagactagtttttccccaccatgggaaag 46757378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 669151 - 669102
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  669151 ggtgccatttaatttgggaaatgagagttttttcccaccataggaaagtt 669102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 24322399 - 24322299
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    ||||||||||||||||||||| | |||||||  ||||||||||||||| |  ||||| ||| |||||| ||||  || ||||| |||||||||  |||||    
T  24322399 ggtgccatttaatttgggaaaggttagttttatcccaccatgggaaaggt-ttttttgaccgttagatcaaatgaggaacacatttttatcatactctct 24322301  T
Q  133 ca 134  Q
    ||    
T  24322300 ca 24322299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 42901163 - 42901118
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  42901163 gctatttttttcccaccatgggaaagttagtttttgaccattagat 42901118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 48259861 - 48259820
Alignment:
Q  38 catttaatttgggaaatgctagtttttccccaccatgggaaa 79  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  48259861 catttaatttgggaaatgttagttttttcccaccatgggaaa 48259820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 25137946 - 25137902
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||    
T  25137946 tttttcccaccatgggaaaattagtttttaaccattagatcaaat 25137902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 33140316 - 33140276
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  33140316 ttttttcccaccatgggaaagttagtttttgaccattagat 33140276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 37468907 - 37468959
Alignment:
Q  30 tcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  37468907 tcaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 37468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 45887286 - 45887326
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  45887286 tttaatttgggaaaggctagttttttcccaccatgggaaag 45887326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 4180359 - 4180320
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  4180359 tttttcccaccatgggaaagttagtttttgaccattagat 4180320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 20560302 - 20560263
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  20560302 tttttcccaccatgggaaagttagtttttgaccattagat 20560263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 41194512 - 41194563
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtta 83  Q
    |||||||||||||||||||||| |  |||| || ||||||||||||||||||    
T  41194512 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtta 41194563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 33686953 - 33686987
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccat 95  Q
    |||| ||||||||||||||||||||||||||||||    
T  33686953 tttttcccaccatgggaaagttagtttttaaccat 33686987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 37864356 - 37864306
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||||   |||| || |||||||||||||||||    
T  37864356 aggtgccatttaatttgggaaataagagttctttcccaccatgggaaagtt 37864306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 38778853 - 38778903
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  38778853 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 38778903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 41224110 - 41224175
Alignment:
Q  34 gtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||||| |||||||||||  |||||||||  ||| ||||||||||| || |||||||||||||||    
T  41224110 gtgccattaaatttgggaaagactagtttttttccatcatgggaaagtaag-ttttaaccattagat 41224175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 668179 - 668228
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 668228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 17145622 - 17145671
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 17145671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 37469053 - 37469004
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 37469004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 38072339 - 38072290
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||||  |||| ||  ||||||||||||||||    
T  38072339 ggtgccatttaatttgggaaatgagagttcttttccaccatgggaaagtt 38072290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 38779611 - 38779562
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 38779562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 42900681 - 42900718
Alignment:
Q  68 caccatgggaaagttagtttttaaccattagattaaat 105  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  42900681 caccatgggaaagttagtttttgaccattagatcaaat 42900718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 4179663 - 4179703
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||||||||| ||| ||||||||||    
T  4179663 ttttttcccaccatgggaaagttagtatttgaccattagat 4179703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 44909408 - 44909360
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||||| |||||||||||||| |  ||||||| |||||||||||||||    
T  44909408 aggtgccgtttaatttgggaaaggtaagttttttcccaccatgggaaag 44909360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 41348146 - 41348257
Alignment:
Q  35 tgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41348146 tgccgtttaatttgggaaaggttagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 41348245  T
Q  135 acatcaaatttt 146  Q
    ||||||||||||    
T  41348246 acatcaaatttt 41348257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 35759287 - 35759174
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    |||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35759287 ggtgccgtttaattagggaaaggctggtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 35759188  T
Q  133 caacatcaaatttt 146  Q
    ||||||||||||||    
T  35759187 caacatcaaatttt 35759174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 41092172 - 41092276
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |    
T  41092172 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 41092271  T
Q  133 caaca 137  Q
    |||||    
T  41092272 caaca 41092276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 30272125 - 30272211
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  30272125 tttttccctaccataggaaagttaatttttaaccattagattaaatagggtacacaattttattatgatctctcaacatcaaatttt 30272211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 36935666 - 36935744
Alignment:
Q  68 caccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||||||  ||||||| |||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36935666 caccatgaaaaagttaatttttaataattagattaaatagggtacacaattttatcatgatctctcaacatcaaatttt 36935744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 42573606 - 42573689
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaat 143  Q
    ||||| ||||||||| |||| ||||||||| ||||||| ||||||||||| |||| || |||| || |||||||||||| ||||    
T  42573606 ttttttcccaccatgagaaaattagtttttgaccattaaattaaatagggaacacgatgttattatagtctctcaacattaaat 42573689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 42111556 - 42111618
Alignment:
Q  75 ggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    ||||||||||||||| ||||||| |||| |||||| | | |||||||||||||||||||||||    
T  42111556 ggaaagttagtttttgaccattaaattagatagggaatataattttatcatggtctctcaaca 42111618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 34992313 - 34992263
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  34992313 aggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 34992263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 14197685 - 14197725
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  14197685 ttttttcccaccatgggaaagttagtttttgaccattagat 14197725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 30846043 - 30846082
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  30846043 tttttcccaccataggaaagttagtttttaaccattagat 30846082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 41859308 - 41859359
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  41859308 caggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 41859359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 27918095 - 27918046
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||| ||||||||||||||||  | ||||| |||||||||||||||||    
T  27918095 ggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagtt 27918046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 30846511 - 30846478
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  30846511 ccaccatgggaaaattagtttttaaccattagat 30846478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 32536708 - 32536757
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||| |||||||  |||| || |||||||||||||||||    
T  32536708 ggtgccatttaatttaggaaatgagagttctttcccaccatgggaaagtt 32536757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 43924490 - 43924602
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    |||| |||||||||||||||| |  |||| || ||||||||||||||| ||  |||| ||| ||||||||||||| | ||| | |||||||||   | ||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagcta-attttgaccgttagattaaatagagaacatatttttatcataaacact 43924588  T
Q  133 caacatcaaatttt 146  Q
    ||||| ||||||||    
T  43924589 caacaccaaatttt 43924602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 1488334 - 1488302
Alignment:
Q  220 atcagagaccatgaaccatcaacagtagcatct 252  Q
    |||||||||||||||||||||||| ||||||||    
T  1488334 atcagagaccatgaaccatcaacactagcatct 1488302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 25876517 - 25876569
Alignment:
Q  29 ttcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagt 81  Q
    |||||||||||||||||||||||||    | ||||| ||||||||||||||||    
T  25876517 ttcaggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagt 25876569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 35387479 - 35387412
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaa 135  Q
    ||||| || |||||||||||||| |||||| ||||| |||||  ||||| ||||||||| |||||||||    
T  35387479 ccaccttgagaaagttagtttttgaccatttgattagataggaaacacacttttatcat-gtctctcaa 35387412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 1034728 - 1034834
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatc 139  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1034728 tttaatttgggaaaggttagtttttccccaccataggaaagttagtttttaaccattagattaaatagggtacacaattttatcatgatctctcaacatc 1034827  T
Q  140 aaatttt 146  Q
    |||||||    
T  1034828 aaatttt 1034834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 10608361 - 10608267
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||    
T  10608361 tttaatttgggaaaggctggttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctca 10608267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 930930 - 931028
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaa-gttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  930930 tttaatttgggaaagactagttttttcccaccatgggaaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaaca 931028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 18605035 - 18605114
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    ||||||||||||||||| ||||||||||||  ||||| ||||| ||| |||||||||||||||||||||||  |||||||    
T  18605035 ccaccatgggaaagttaatttttaaccattgaattaagtagggaacataattttatcatggtctctcaacactaaatttt 18605114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 28534784 - 28534869
Alignment:
Q  51 aaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    ||||| ||||||||| | |||||||||| ||||||||||||| ||| |||||||||||| ||| ||||||| ||| |||||||||||    
T  28534784 aaatgttagtttttctc-accatgggaaggttagtttttaactattggattaaatagggaacaaaattttaccatagtctctcaaca 28534869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 7635138 - 7635190
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  7635138 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 7635190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 18290529 - 18290477
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  18290529 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 18290477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 7635656 - 7635617
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  7635656 tttttcccaccatgggaaagttagtttttaaccattagat 7635617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 10607406 - 10607472
Alignment:
Q  38 catttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||||||||||||  ||||||||| |||||||||||||||  || ||| ||||||||||||||||    
T  10607406 catttaatttgggaaagactagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 10607472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 3543111 - 3543062
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 3543062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 9428115 - 9428058
Alignment:
Q  89 taaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||| ||||||||||||| |||||| ||||||||| || ||||||||||| |||||||    
T  9428115 taactattagattaaatatggtacataattttatcgtgatctctcaacattaaatttt 9428058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 18290229 - 18290281
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||    
T  18290229 tgggaaaagctaatttttccc-accatgggaaagttaatttttaaccattagat 18290281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 28983319 - 28983274
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  28983319 gctacttttttcccaccatgggaaagttagtttttgaccattagat 28983274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 34717782 - 34717737
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  34717782 gctacttttttcccaccatgggaaagttagtttttgaccattagat 34717737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 7193335 - 7193387
Alignment:
Q  30 tcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  7193335 tcaggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 7193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 34034201 - 34034280
Alignment:
Q  66 cccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||||||||||||||||| |||| ||||||| ||| |||||| | ||| | ||||||||||| || ||| |||||||||||    
T  34034201 cccaccatgggaaagtta-ttttaaaccattggatcaaatagagaacatagttttatcatggactttcagcatcaaatttt 34034280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 3542816 - 3542863
Alignment:
Q  35 tgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 3542863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 80
Target Start/End: Original strand, 9427358 - 9427392
Alignment:
Q  46 ttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||||||| ||||||||||||||||||||||||||    
T  9427358 ttgggaaaggctagtttttccccaccatgggaaag 9427392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 34717263 - 34717313
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    |||| ||||| |||||||||||||||||||||||| | |||||||| ||||    
T  34717263 gctacttttttcccaccatgggaaagttagtttttgatcattagatcaaat 34717313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 2924999 - 2924954
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  2924999 gctacttttttcccaccataggaaagttagtttttgaccattagat 2924954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 12999511 - 12999459
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| |||||| | |||||||||||||||||||||||    
T  12999511 tgggaaaggctaatttttccc-accatgagcaagttagtttttaaccattagat 12999459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 19062850 - 19062805
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| ||||||||| |||||||||||||| ||||||||||    
T  19062850 gctacttttttcccaccatgagaaagttagtttttgaccattagat 19062805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 33480676 - 33480627
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 33480627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 24125972 - 24126039
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagatt 101  Q
    |||| |||||||||||||||| |  |||| || |||||||||||||||||| |||| | ||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagtta-ttttcagccattagatt 24126039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 46719660 - 46719771
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctc 131  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||    
T  46719660 aggtgccatttaatttgggaaatgctagttttttctcatcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctc 46719759  T
Q  132 tcaacatcaaat 143  Q
    ||||||| ||||    
T  46719760 tcaacattaaat 46719771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 38741262 - 38741367
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctc 131  Q
    |||||||||||||||||||||  |||||||||| | || ||  |||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||    
T  38741262 aggtgccatttaatttgggaatggctagttttttctcatcaaaggaaagttagtttttggccattagattaaatagggaacacaattttaccatggtctc 38741361  T
Q  132 tcaaca 137  Q
    ||||||    
T  38741362 tcaaca 38741367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 26837212 - 26837141
Alignment:
Q  66 cccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    |||||||||||||| ||||||||||||||||  ||||| ||||| ||| ||||||| |||||||||||||||    
T  26837212 cccaccatgggaaaattagtttttaaccattgaattaagtagggaacaaaattttaccatggtctctcaaca 26837141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 24394768 - 24394716
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  24394768 tgggaaatgctaatttttccc-accatgggaaagttagtttttaaccattagat 24394716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 20586086 - 20586143
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  20586086 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagatcaaat 20586143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 5113212 - 5113264
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  5113212 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 5113264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 20586618 - 20586566
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  20586618 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 20586566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 26006160 - 26006212
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  26006160 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 26006212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 36992207 - 36992155
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  36992207 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 36992155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 37017647 - 37017595
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  37017647 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 37017595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 37999503 - 37999568
Alignment:
Q  72 atgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    |||||||||||||||||||||||||  ||||| ||||| ||| ||||||| |||| ||||||||||    
T  37999503 atgggaaagttagtttttaaccattgaattaagtagggaacaaaattttaccatgatctctcaaca 37999568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 45000861 - 45000809
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  45000861 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 45000809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 5113724 - 5113690
Alignment:
Q  66 cccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||||||||||||||||||||||||||||||||    
T  5113724 cccaccatgggaaagttagtttttaaccattagat 5113690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 45000329 - 45000386
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| || ||||||||||||||||||||||||||||| ||||    
T  45000329 tgggaaaggctaatttttccc-actatgggaaagttagtttttaaccattagatcaaat 45000386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 46739656 - 46739729
Alignment:
Q  72 atgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    ||||||||||||||||  |||||||  ||||||||||| ||| ||||| |||||||||||||||||  |||||||    
T  46739656 atgggaaagttagtttg-aaccatttaattaaatagggaacataatttcatcatggtctctcaacactaaatttt 46739729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 929925 - 929977
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||    
T  929925 tgggaaat-ctacttttttcccaccatgggaaagttagtttttgaccattagat 929977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 930460 - 930415
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  930460 gctacttttttcccaccatgggaaagttagtttttgaccattagat 930415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 11442182 - 11442137
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  11442182 gctacttttttcccaccatgggaaagttagtttttgaccattagat 11442137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 32474489 - 32474444
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  32474489 gctacttttttcccaccatgggaaagttagtttttgaccattagat 32474444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 43104811 - 43104759
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||||||||| |||||||| |  |||||||||||||||||||||||||||||    
T  43104811 tgggaaatgctaatttttccc-ataatgggaaagttagtttttaaccattagat 43104759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 43521098 - 43521143
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  43521098 gctacttttttcccaccatgggaaagttagtttttgaccattagat 43521143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 37105126 - 37105055
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| |||||||||||||| |  | ||||| |||||||||||||||||  |||| |||||||||||||||    
T  37105126 aggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagtt-tttttaaaccattagattaaa 37105055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 21811879 - 21811949
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    |||||| ||||||||||||||||  | ||||| || |||||||||||| || |||| |||||||||||||||    
T  21811879 ggtgccgtttaatttgggaaatgagacttttttcctaccatgggaaaggta-ttttaaaccattagattaaa 21811949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 36750486 - 36750436
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  36750486 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 36750436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 19132860 - 19132811
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  19132860 ggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagtt 19132811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 24394280 - 24394313
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| ||||||||||||||||||||||||||    
T  24394280 ccaccataggaaagttagtttttaaccattagat 24394313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 32473782 - 32473827
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| ||||| |||||||||||||||||| ||||||||||    
T  32473782 gctacttttttcccactatgggaaagttagtttttgaccattagat 32473827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 38923713 - 38923664
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||||  |||| || |||||||||| ||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagtt 38923664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 11441683 - 11441715
Alignment:
Q  68 caccatgggaaagttagtttttaaccattagat 100  Q
    |||||||||||||||||||||| ||||||||||    
T  11441683 caccatgggaaagttagtttttgaccattagat 11441715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 21166178 - 21166138
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  21166178 ttttttcccaccatgggaaaattagtttttgaccattagat 21166138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 38000314 - 38000274
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  38000314 ttttttcccaccatggaaaagttagtttttgaccattagat 38000274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 42423242 - 42423203
Alignment:
Q  66 cccaccatgggaaagttagtttttaaccattagattaaata 106  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  42423242 cccaccatgggaaagtta-tttttaaccatcagattaaata 42423203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 50306372 - 50306340
Alignment:
Q  220 atcagagaccatgaaccatcaacagtagcatct 252  Q
    |||||||||||||||||||||||| ||||||||    
T  50306372 atcagagaccatgaaccatcaacactagcatct 50306340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 49399611 - 49399497
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctc 131  Q
    ||||||| ||||||||||| ||  |||||||| | || |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49399611 aggtgccgtttaatttgggtaagactagttttcctccgccataggaaagttagtttttaaccattagattaaatagggtatacaattttatcatggtctc 49399512  T
Q  132 tcaacatcaaatttt 146  Q
    |||||||||||||||    
T  49399511 tcaacatcaaatttt 49399497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 52758757 - 52758648
Alignment:
Q  34 gtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctc 133  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||||||||||  |||||||||||||||||| ||||||||||| ||| |||||||    
T  52758757 gtgccatttaatttgggaaatgctagttttttctcatcatgggaaagttagtttttggccattagattaaatagggaacacaattttaccatagtctctc 52758658  T
Q  134 aacatcaaat 143  Q
    ||||| ||||    
T  52758657 aacattaaat 52758648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 53289500 - 53289586
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53289500 tttttccccaacatgggaaagttaatttttaatcattagattaaatagggtacacaattttatcatggtctctgaacatcaaatttt 53289586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 11680283 - 11680377
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||    
T  11680283 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctca 11680377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 11688562 - 11688656
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||    
T  11688562 tttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctca 11688656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 12590244 - 12590150
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||    
T  12590244 tttaatttgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctca 12590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 31634103 - 31634207
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    |||||||||||||||| |||| |||  |||||  | |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |    
T  31634103 ggtgccatttaatttgcgaaaggcttatttttttctaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtcttt 31634202  T
Q  133 caaca 137  Q
    |||||    
T  31634203 caaca 31634207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 25655680 - 25655586
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||||    
T  25655680 tttaatttgggaaagactagttttttcccaccatgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtctctca 25655586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 46764259 - 46764353
Alignment:
Q  40 tttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    |||||||||| |||  ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||  ||||||| |||| |||||||||||    
T  46764259 tttaatttggaaaagactagttttttcccaccatgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtctctca 46764353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 31910553 - 31910651
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagg-gtacacaattttatcatggtct 130  Q
    ||||| |||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||| ||| |||  |||||||||||||||||    
T  31910553 aggtgtcatttaatttaggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattaaattaaagaggagta-tcaattttatcatggtct 31910651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 3619042 - 3619111
Alignment:
Q  77 aaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||||||  ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  3619042 aaagttaagttttaactattagattaaataggatacacaattttatcatgatctctcaacattaaatttt 3619111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 39413642 - 39413557
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||| |||||||| |||||||||||||||||||||| |||||| ||| | ||| ||||||||||||||||||| |||  |||||||    
T  39413642 tttttcccaccataggaaagttagtttttaaccattggattaagtagagaacataattttatcatggtctctcgacactaaatttt 39413557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 38014970 - 38014923
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  38014970 ggtgccgtttaatttgggaaaggctagtttttccccaccatgggaaag 38014923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 5235388 - 5235440
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  5235388 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 5235440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 20174984 - 20175036
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  20174984 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 20175036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 46765217 - 46765145
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||| ||||||||||||||||  ||||||||| |||||||||||||||  || ||| ||||||||||||||||    
T  46765217 aggtggcatttaatttgggaaagactagttttttcccaccatgggaaagcaag-tttcaaccattagattaaat 46765145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 25370511 - 25370553
Alignment:
Q  38 catttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  25370511 catttaatttgggaaaggctagttttttcccaccatgggaaag 25370553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 6934517 - 6934484
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||||||||||||||||||||||||||||||    
T  6934517 ccaccatgggaaagttagtttttaaccattagat 6934484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 19860351 - 19860396
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  19860351 gctatttttttcccaccatgggaaagttagtttttgaccattagat 19860396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 47377647 - 47377579
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagatt 101  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||| |||| | ||||||||||    
T  47377647 aggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtta-ttttcagccattagatt 47377579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 26611333 - 26611282
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||| |||||||||||||||| |  ||||||| |||||||||||||||||    
T  26611333 caggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagtt 26611282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 32292249 - 32292171
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatg 126  Q
    |||||||||||| ||||| ||||||||| |||||||| |||| |||| || ||||||||||   ||||||| ||||||||    
T  32292249 tgggaaatgctacttttt-cccaccatgagaaagttatttttcaaccctttgattaaatagaaaacacaatcttatcatg 32292171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 47523270 - 47523317
Alignment:
Q  85 tttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    ||||| |||||||||||||||| || ||||||||||||||| ||||||    
T  47523270 tttttgaccattagattaaataaggaacacaattttatcatagtctct 47523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 11417686 - 11417736
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 11417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 29651381 - 29651331
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 29651331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 39412779 - 39412836
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| | |||||||||||||||||||||||||| ||| ||||    
T  39412779 tgggaaaggctaatttttccc-atcatgggaaagttagtttttaaccattggatcaaat 39412836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 55864259 - 55864293
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccc 67  Q
    |||| ||||||||||||||||||||||||||||||    
T  55864259 ggtgacatttaatttgggaaatgctagtttttccc 55864293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 11681323 - 11681251
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||| |||||||||||| |||  ||||||||| |||||||||||||||  |  ||| ||||||||||||||||    
T  11681323 aggtggcatttaatttggaaaagactagttttttcccaccatgggaaag-caaatttcaaccattagattaaat 11681251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 11689602 - 11689530
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||| |||||||||||| |||  ||||||||| |||||||||||||||  |  ||| ||||||||||||||||    
T  11689602 aggtggcatttaatttggaaaagactagttttttcccaccatgggaaag-caaatttcaaccattagattaaat 11689530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 12589286 - 12589358
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||| ||||||||||||||||   |||||||| ||||| |||||||||  || ||| ||||||||||||||||    
T  12589286 aggtgacatttaatttgggaaagattagttttttcccactatgggaaagcaag-tttcaaccattagattaaat 12589358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 38143781 - 38143736
Alignment:
Q  37 ccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||  |||| || |||||||||||||||||    
T  38143781 ccatttaatttgggaaatgagagttctttcccaccatgggaaagtt 38143736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 49398412 - 49398453
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatg 74  Q
    |||||| |||||||||||||||| |||||||| |||||||||    
T  49398412 ggtgccgtttaatttgggaaatgttagttttttcccaccatg 49398453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 3167498 - 3167454
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    |||| |||||||||||||||||  |||||||||||| ||||||||    
T  3167498 tttttcccaccatgggaaagttgttttttaaccatttgattaaat 3167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 3847891 - 3847959
Alignment:
Q  38 catttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaata 106  Q
    |||||||||||||||| |  | ||||| ||||||||||||||||   ||||| |||||||||| |||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagtatttttttgaccattagatcaaata 3847959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 19860894 - 19860854
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||| ||||||||||||||||| ||||||||||    
T  19860894 ttttttcccaccgtgggaaagttagtttttgaccattagat 19860854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 54007629 - 54007669
Alignment:
Q  90 aaccattagattaaatagggtacacaattttatcatggtct 130  Q
    ||||||||||||||||| || ||||||||||||||| ||||    
T  54007629 aaccattagattaaataaggaacacaattttatcatagtct 54007669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 17339 - 17443
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    ||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |    
T  17339 ggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcatggtcttt 17438  T
Q  133 caaca 137  Q
    |||||    
T  17439 caaca 17443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 49611607 - 49611504
Alignment:
Q  34 gtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctc 133  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||| |||||||||  |||||||||||||||||| ||||||||||| |||||||||||    
T  49611607 gtgccatttaatttgggaaaggctagttttttcccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatggtctctc 49611508  T
Q  134 aaca 137  Q
    ||||    
T  49611507 aaca 49611504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 32538536 - 32538438
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    ||||||| |||| |||||||| ||||||| ||||||||||||||||||||  ||||| ||||| ||| ||| |||||||||||||||||||  |||||||    
T  32538536 tgggaaaggctaatttttccc-accatggaaaagttagtttttaaccattgaattaagtagggaacataatgttatcatggtctctcaacactaaatttt 32538438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 45065435 - 45065375
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaac 92  Q
    |||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||    
T  45065435 aggtgccatttaatttggaaaaagcttgttttttcccaccatgggaaagttagtttttaac 45065375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 38468920 - 38468977
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||    
T  38468920 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattatattaaat 38468977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 43755863 - 43755915
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  43755863 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 43755915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 45064685 - 45064752
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||||||||||||||||||   |||||||| |||| ||||||||||| || |||||||||||||||    
T  45064685 aggtgccatttaatttgggaaagattagttttttcccatcatgggaaagtaag-ttttaaccattagat 45064752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 32537659 - 32537716
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||| ||| ||||    
T  32537659 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattggatcaaat 32537716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 38469300 - 38469262
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  38469300 ccaccatgggaaagttagtttttaaccattagatcaaat 38469262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 2820979 - 2821024
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  2820979 gctacttttttcccaccatgggaaagttagtttttgaccattagat 2821024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 17151894 - 17151857
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17151894 ccaccatgggaaagttagtttttgaccattagattaaa 17151857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 28371730 - 28371685
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  28371730 gctacttttttcccaccatgggaaagttagtttttgaccattagat 28371685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 12800492 - 12800452
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  12800492 ttttttcccaccatgggaaagttagtttttgaccattagat 12800452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 43738041 - 43737977
Alignment:
Q  18 tactatatctcttcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||| | ||||||||||||||||||||||||| |  |||| || |||| ||||||||||||    
T  43738041 tactatattttttcaggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagtt 43737977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 33630510 - 33630549
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagattaaata 106  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  33630510 ccaccatgggaaagttagtttttgaccattaaattaaata 33630549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 51987825 - 51987900
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaata 106  Q
    |||||| |||||||||||||||| |  | || || ||||||||||||||||   |||||||||||||||| |||||    
T  51987825 caggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtatttttttaaccattagatcaaata 51987900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Complemental strand, 43756362 - 43756332
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccatta 97  Q
    |||||||||||||||||||||||||||||||    
T  43756362 ccaccatgggaaagttagtttttaaccatta 43756332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 51974436 - 51974486
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  51974436 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 51974486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 16270207 - 16270256
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 16270256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 17151016 - 17151072
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| ||| ||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  17151016 tgggaaaggctggtttttccc-accatgggaaagttattttttgaccactagattaaa 17151072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 23440913 - 23440864
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 23440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 48594252 - 48594207
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  48594252 gctacttttttcccatcatgggaaagttagtttttgaccattagat 48594207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 48598863 - 48598818
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||| ||||||||||||||||||| ||||||||||    
T  48598863 gctacttttttcccatcatgggaaagttagtttttgaccattagat 48598818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 2821511 - 2821471
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  2821511 ttttttcccaccatgggaaagttaatttttgaccattagat 2821471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 3788634 - 3788666
Alignment:
Q  220 atcagagaccatgaaccatcaacagtagcatct 252  Q
    |||||||||||||||||||||||| ||||||||    
T  3788634 atcagagaccatgaaccatcaacactagcatct 3788666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 8561785 - 8561737
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| ||||||||||||||||  ||||||||| |||| ||||||||||    
T  8561785 aggtgacatttaatttgggaaagactagttttttcccatcatgggaaag 8561737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 33631112 - 33631072
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  33631112 ttttttcccaccatgggaaaattagtttttgaccattagat 33631072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 40992222 - 40992319
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtct 130  Q
    ||||||||||||||||||||| | | |||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  40992222 ggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagttagtttttaaccatttgattaaatagggaacacaattttatcatggtct 40992319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 16426553 - 16426657
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctct 132  Q
    ||||||||||||||||||||| ||| |||||| |||||||||| ||||||| |||||||||||| |||||| ||||| | |||||||||||||||||| |    
T  16426553 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttaatttttaaccatttgattaagtagggaatacaattttatcatggtcttt 16426652  T
Q  133 caaca 137  Q
    |||||    
T  16426653 caaca 16426657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 29921541 - 29921471
Alignment:
Q  76 gaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  29921541 gaaagttagtttttaaccattaaattaaatagggtacacaattttataatggtctctcaacattaaatttt 29921471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 6610077 - 6610021
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  6610077 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagattaaa 6610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 15562074 - 15562018
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  15562074 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagattaaa 15562018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 16992426 - 16992373
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||    
T  16992426 tgggaaaggctaatttttcctcaccatgggaaagttagtttttaaccattagat 16992373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 16903931 - 16903879
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  16903931 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 16903879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 30899404 - 30899456
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  30899404 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 30899456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 37996617 - 37996560
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaat 105  Q
    ||||||| |||| |||||||| | |||||||||||||||||||||||||||||| ||||    
T  37996617 tgggaaaggctaatttttccc-atcatgggaaagttagtttttaaccattagatcaaat 37996560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 3705358 - 3705403
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||    
T  3705358 gctacttttttcccaccatgggaaagttagtttttgaccattagat 3705403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 6609565 - 6609617
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||    
T  6609565 tgggaaaggctaatttttccc-accatggaaaagttagtttttaaccattagat 6609617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 7994069 - 7994121
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| | ||||||||||||||||||||||||||||||    
T  7994069 tgggaaaggctaatttttccc-atcatgggaaagttagtttttaaccattagat 7994121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 7994588 - 7994555
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||||||||||||||||||||||||||||||    
T  7994588 ccaccatgggaaagttagtttttaaccattagat 7994555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 14487969 - 14488030
Alignment:
Q  72 atgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctc 133  Q
    |||||||||||| ||||||||||||||||| | || || ||||| ||||||||| |||||||    
T  14487969 atgggaaagttactttttaaccattagattgattatggaacacacttttatcatagtctctc 14488030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 14573261 - 14573310
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 14573310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 16903412 - 16903464
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||    
T  16903412 tgggaaaggctaatttttccc-accatggaaaagttagtttttaaccattagat 16903464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 30545485 - 30545413
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||||||||||||||||||| |  |||| || ||||  |||||||||||  ||||||||||||||||||||    
T  30545485 caggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaagtt-ttttttaaccattagattaaa 30545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 41984725 - 41984774
Alignment:
Q  31 caggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||||| |||||||||||||||| |||||||||| | |||||||||||||    
T  41984725 caggtggcatttaatttgggaaaggctagttttttctcaccatgggaaag 41984774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 5006323 - 5006252
Alignment:
Q  66 cccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    ||||||||| |||||||| ||||||| ||||  ||||| ||||| ||| ||||||| ||| |||||||||||    
T  5006323 cccaccatgagaaagttactttttaatcattgaattaagtagggaacaaaattttaccattgtctctcaaca 5006252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 15561568 - 15561607
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  15561568 tttttcccaccattggaaagttagtttttaaccattagat 15561607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 21471016 - 21471066
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  21471016 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 21471066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 3705839 - 3705806
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||||||||||||||||||| ||||||||||    
T  3705839 ccaccatgggaaagttagtttttgaccattagat 3705806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 21472002 - 21471953
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 21471953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 30544727 - 30544799
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaata 106  Q
    |||||||||||||||||||||||  |||| || ||||  ||||||||||| | ||||| ||||| |||||||||    
T  30544727 ggtgccatttaatttgggaaatggaagttgtttcccatgatgggaaagtt-gattttagccatttgattaaata 30544799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 36476737 - 36476696
Alignment:
Q  91 accattagattaaatagggtacacaattttatcatggtctct 132  Q
    |||||||||||||||| || ||||||||||||||| ||||||    
T  36476737 accattagattaaataaggaacacaattttatcatagtctct 36476696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 2650228 - 2650299
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| ||||||||||||||||  | ||||| |||| ||||| ||||||  |||| |||||||||||||||    
T  2650228 aggtgccgtttaatttgggaaatgagacttttttcccatcatggaaaagtt-tttttaaaccattagattaaa 2650299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 26021760 - 26021728
Alignment:
Q  220 atcagagaccatgaaccatcaacagtagcatct 252  Q
    |||||||||||||||||||||||| ||||||||    
T  26021760 atcagagaccatgaaccatcaacactagcatct 26021728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 41043377 - 41043329
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| |||||||||||||||| |||||||||| |||| ||||| ||||    
T  41043377 aggtggcatttaatttgggaaaggctagttttttcccatcatggaaaag 41043329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 44154275 - 44154347
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    |||||||||||||||||||||| |  |||| || ||||  ||| |||||||  ||||||||||||| ||||||    
T  44154275 aggtgccatttaatttgggaaagggaagttgtttcccatgatgtgaaagtttttttttaaccattaaattaaa 44154347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 23117 - 23027
Alignment:
Q  56 ctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaacatcaaatttt 146  Q
    ||||||||| |||| |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||    
T  23117 ctagttttttcccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacactaaatttt 23027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 42654851 - 42654939
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctcaaca 137  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||||||| |||||| ||||| ||| ||||||| |||||||||||||||    
T  42654851 tgggaaaggctagtttttcc--accatgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaaca 42654939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 8320889 - 8320945
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  8320889 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagattaaa 8320945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 16971081 - 16971015
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||||||||||||||||||||  ||||||||| |||| ||||||||||| || |||||||||||||||    
T  16971081 ggtgccatttaatttgggaaagactagttttttcccatcatgggaaagtaag-ttttaaccattagat 16971015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 3595791 - 3595843
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  3595791 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 3595843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 7858341 - 7858393
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  7858341 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 7858393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 8321421 - 8321369
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  8321421 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 8321369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 12190210 - 12190157
Alignment:
Q  29 ttcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  12190210 ttcaggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagtt 12190157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 12330696 - 12330644
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  12330696 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 12330644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 33284075 - 33283971
Alignment:
Q  29 ttcaggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggt 128  Q
    ||||||||||||||||||||||||| | |||||||  ||||||||||||||| |  ||||| ||| |||||| ||||  || ||||| |||||||||  |    
T  33284075 ttcaggtgccatttaatttgggaaaggttagttttatcccaccatgggaaaggt-ttttttgaccgttagatcaaatgaggaacacatttttatcatact 33283977  T
Q  129 ctctca 134  Q
    ||||||    
T  33283976 ctctca 33283971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 26268343 - 26268391
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| |||||||||||||||||| |||||||| |||||||||||||||    
T  26268343 aggtggcatttaatttgggaaatgttagttttttcccaccatgggaaag 26268391  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 2319266 - 2319313
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||    
T  2319266 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaag 2319313  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 36626679 - 36626629
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||||||  |||| || |||||||||||||||||    
T  36626679 aggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagtt 36626629  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 12330162 - 12330214
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||    
T  12330162 tgggaaaggctaatttttccc-accatgggaaagttaatttttaaccattagat 12330214  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 2320016 - 2319968
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaag 80  Q
    ||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  2320016 aggtggcatttaatttgggaaaggctagttttttcccaccataggaaag 2319968  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 3596314 - 3596275
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  3596314 tttttcccaccatgggaaaattagtttttaaccattagat 3596275  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 24027707 - 24027668
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  24027707 tttttcccatcatgggaaagttagtttttaaccattagat 24027668  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 27123656 - 27123581
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagg 108  Q
    |||| |||||| | ||| ||| ||||||||||  ||||||| |||||||| | ||| |||||||||||||||||||    
T  27123656 ggtgtcatttagtctggaaaaggctagtttttttccaccataggaaagtttggtttaaaccattagattaaatagg 27123581  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 8204119 - 8204169
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  8204119 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 8204169  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 31078489 - 31078519
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccatta 97  Q
    |||||||||||||||||||||||||||||||    
T  31078489 ccaccatgggaaagttagtttttaaccatta 31078519  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 686417 - 686465
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  ||||||| |||||||||||||||||    
T  686417 ggtgccatttaatttgggaaaggagagttttt-cccaccatgggaaagtt 686465  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 15184065 - 15184016
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 15184016  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 16997056 - 16997011
Alignment:
Q  55 gctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| ||||| || ||||||||||||||||||||| ||||||||||    
T  16997056 gctacttttttcctaccatgggaaagttagtttttgaccattagat 16997011  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 24027201 - 24027253
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||| |||||||||||||||| |||||||    
T  24027201 tgggaaaggctaatttttccc-accatggaaaagttagtttttaactattagat 24027253  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 29759630 - 29759663
Alignment:
Q  67 ccaccatgggaaagttagtttttaaccattagat 100  Q
    |||| |||||||||||||||||||||||||||||    
T  29759630 ccactatgggaaagttagtttttaaccattagat 29759663  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 33283169 - 33283265
Alignment:
Q  37 ccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagggtacacaattttatcatggtctctca 134  Q
    ||||||||||||||||| | |||||||  |||| |||||||||| |  ||||| |||||||||| ||||  || ||||| |||||||||  |||||||    
T  33283169 ccatttaatttgggaaaggttagttttatcccatcatgggaaaggt-ttttttgaccattagatcaaatgaggaacacatttttatcatactctctca 33283265  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 2458403 - 2458332
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaa 104  Q
    ||||||| ||||||||||||||||  | |||||  ||||||||| ||||||  |||| |||||||||||||||    
T  2458403 aggtgccgtttaatttgggaaatgagactttttttccaccatggaaaagtt-tttttaaaccattagattaaa 2458332  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 5620891 - 5620851
Alignment:
Q  60 tttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  5620891 ttttttcccaccatgggaaaattagtttttgaccattagat 5620851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 7858832 - 7858804
Alignment:
Q  69 accatgggaaagttagtttttaaccatta 97  Q
    |||||||||||||||||||||||||||||    
T  7858832 accatgggaaagttagtttttaaccatta 7858804  T

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Target: scaffold0129 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 42486 - 42561
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagattaaatagg 108  Q
    |||||||||||   ||||||| ||||||||||  |||||||||||||||| | ||| |||||||||||||||||||    
T  42486 ggtgccatttagcatgggaaaggctagtttttttccaccatgggaaagttgggtttaaaccattagattaaatagg 42561  T

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Target: scaffold0508 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 4147 - 4199
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  4147 tgggaaaggctaatttttccc-accatgggaaagttagtttttaaccattagat 4199  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 209 - 159
Alignment:
Q  32 aggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    |||||||||||||||||||||| |  |||| || |||||||||||||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 27623 - 27574
Alignment:
Q  33 ggtgccatttaatttgggaaatgctagtttttccccaccatgggaaagtt 82  Q
    ||||||||||||||||| ||| |  ||||||| |||||||||||||||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagtt 27574  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 61588 - 61640
Alignment:
Q  47 tgggaaatgctagtttttccccaccatgggaaagttagtttttaaccattagat 100  Q
    ||||||| |||| |||||||| | ||||||||||||||||||| ||||||||||    
T  61588 tgggaaaggctaatttttccc-atcatgggaaagttagtttttgaccattagat 61640  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 202304 - 202268
Alignment:
Q  61 ttttccccaccatgggaaagttagtttttaaccatta 97  Q
    |||| |||||||||| |||||||||||||||||||||    
T  202304 tttttcccaccatggaaaagttagtttttaaccatta 202268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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