View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16661_high_34 (Length: 269)
Name: NF16661_high_34
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 38361623 - 38361472
Alignment:
| Q |
46 |
atactagttatttatgcaagtaaagtcagaaagcacgccaaatccaacgttacacactgctcaacaacgtccaaaagaaccaatacaagacattgaagcc |
145 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38361623 |
atactagttatttatgcaagtaaaggcagaaagcacgccaaatccaacgttacacactgctcaacaacgtccaaaagaaccaatacaagacattgaagcc |
38361524 |
T |
|
| Q |
146 |
cttgtgaagggatggtgatggtccgaatggagagagggatacatcatgatcata |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
38361523 |
cttgtgaagggatggtgatggtccgaatggagagagg--tatatcatgatcata |
38361472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University