View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_36 (Length: 265)

Name: NF16661_high_36
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_36
NF16661_high_36
[»] chr3 (14 HSPs)
chr3 (6-265)||(36024108-36024367)
chr3 (6-265)||(36003011-36003270)
chr3 (27-236)||(23447789-23447998)
chr3 (35-236)||(23479086-23479287)
chr3 (72-230)||(23454599-23454757)
chr3 (135-232)||(23469128-23469225)
chr3 (141-253)||(23352550-23352662)
chr3 (142-221)||(23473054-23473133)
chr3 (41-236)||(23499571-23499766)
chr3 (135-253)||(23386879-23386997)
chr3 (135-232)||(23405253-23405350)
chr3 (135-232)||(23463884-23463981)
chr3 (141-232)||(23401675-23401766)
chr3 (142-220)||(23440525-23440603)
[»] chr4 (1 HSPs)
chr4 (18-232)||(12896270-12896484)
[»] chr2 (2 HSPs)
chr2 (19-197)||(16122248-16122426)
chr2 (19-197)||(16336774-16336952)
[»] scaffold0201 (1 HSPs)
scaffold0201 (79-253)||(11992-12166)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 36024108 - 36024367
Alignment:
Q  6 aaatatatcctgctgagtacaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36024108 aaatatatcctgctgagtacaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactt 36024207  T
Q  106 tcccacacttctttgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36024208 tcccacacttctttgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagccaattgctctttttgatagatctc 36024307  T
Q  206 catacccaattttaggatatttttctctgaaagcctccaaacagaatacctcgagagatt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36024308 catacccaattttaggatatttttctctgaaagcctccaaacagaatacctcgagagatt 36024367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 36003011 - 36003270
Alignment:
Q  6 aaatatatcctgctgagtacaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactt 105  Q
    |||||| ||||| ||||||| ||||||  |||| ||||| ||||||| |||||||||||| || | ||| || ||||||||||||||||||| |||||||    
T  36003011 aaatatctcctgttgagtacgatctaagtcatcgaaactcaattttagcacatcatgaattctcccattaggaatctttttgagcttttccaattcactt 36003110  T
Q  106 tcccacacttctttgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctc 205  Q
    |||||  ||||||||||||| ||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| | |    
T  36003111 tcccatgcttctttgctttttgtacggaaatttgcacctaaaacttttaaagccaggggattgcctccgcaatagccaattgctctttttgatagacccc 36003210  T
Q  206 catacccaattttaggatatttttctctgaaagcctccaaacagaatacctcgagagatt 265  Q
     |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  36003211 tatacccaatttttggatatttttctctgaaagcctccaaacagaatacctcaagagatt 36003270  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 23447789 - 23447998
Alignment:
Q  27 atctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttctttgcttttg 126  Q
    ||||||| ||||| |||| |||||||||||||||| |||| |||||||||| ||||||| |||||||| ||||||| |||||||  |||||  ||   |     
T  23447789 atctaaatcatcataactcaattttaacacatcataaatctttcgattgggaatcttttggagctttttcagttcattttcccatgcttctcggcccctt 23447888  T
Q  127 gtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatt 226  Q
    | ||  | ||||| |||||||||||||||| | || || || |||  ||||||| ||||| | || | |||||||||| |||| ||| ||||||||| ||    
T  23447889 gaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaataggcaattacactatctgatagatcttcatatccagttttaggatgtt 23447988  T
Q  227 tttctctgaa 236  Q
    ||||| ||||    
T  23447989 tttctttgaa 23447998  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 236
Target Start/End: Original strand, 23479086 - 23479287
Alignment:
Q  35 catcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttctttgcttttggtacgaaa 134  Q
    ||||| |||| ||||||||||||| ||||||  |||||||||| ||||||| |||||||| || |||| |||||||| |||||| ||   | | ||  |     
T  23479086 catcataactcaattttaacacattatgaatttttcgattgggaatcttttggagctttttcaattcattttcccacgcttcttggccccttgaactgag 23479185  T
Q  135 atttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctctg 234  Q
    ||||| |||||||||||||||  | || || || |||  ||||||| ||||| | |||| |||||||||| |||| ||||||||||| | ||||||| ||    
T  23479186 atttgcacctaaaacttttaatgccagagggttacctttgcaataggcaattacactttctgatagatcttcatatccaattttaggttgtttttctttg 23479285  T
Q  235 aa 236  Q
    ||    
T  23479286 aa 23479287  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 23454599 - 23454757
Alignment:
Q  72 attgggtatctttttgagcttttccagttcactttcccacacttctttgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcct 171  Q
    |||||| ||||||| |||||||| || |||| |||||||  | ||||||| | | | ||  | ||| | |||||||||||||||| | || |||||||||    
T  23454599 attgggaatcttttggagctttttcaattcattttcccattcatctttgcctcttgaactcagattagcacctaaaacttttaaagccagaggattgcct 23454698  T
Q  172 ccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttc 230  Q
      ||||||| ||||| | || | |||||||||| |||| ||||||||||||| ||||||    
T  23454699 ttgcaataggcaattacactctctgatagatcttcatatccaattttaggatgtttttc 23454757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 23469128 - 23469225
Alignment:
Q  135 atttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctc 232  Q
    ||||| |||||||||||||| | | || |||||||||  ||||||| ||||| | || | |||||||||| |||| ||||||||||||| ||||||||    
T  23469128 atttgcacctaaaacttttatagccagaggattgcctttgcaataggcaattacactctctgatagatcttcatatccaattttaggatgtttttctc 23469225  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 23352550 - 23352662
Alignment:
Q  141 acctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctctgaaagcc 240  Q
    |||||||||||||||| | || |||||||||  ||||||| ||||| | | || |||||||||| |||| ||||| |||||||  ||||||||||| ||     
T  23352550 acctaaaacttttaaagccagcggattgccttggcaataggcaattacacgttctgatagatcttcatatccaatattaggatgcttttctctgaaggca 23352649  T
Q  241 tccaaacagaata 253  Q
      |||||||||||    
T  23352650 gacaaacagaata 23352662  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 23473054 - 23473133
Alignment:
Q  142 cctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttagg 221  Q
    ||||||||||||||| | || |||||||||  ||||||| ||||| | |||| |||||||||| |||| |||||||||||    
T  23473054 cctaaaacttttaaagccagaggattgcctttgcaataggcaattacactttctgatagatcttcatatccaattttagg 23473133  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 236
Target Start/End: Original strand, 23499571 - 23499766
Alignment:
Q  41 aacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttctttgcttttggtacgaaaatttgt 140  Q
    |||| ||||||||||||| || |||| || ||||||| ||||||| |||||||| ||||||| |||||||  |||||  ||   | | ||  | |||||     
T  23499571 aactaaattttaacacattataaatcttttgattgggaatcttttggagctttttcagttcattttcccatgcttctcggccccttgaactgagatttgc 23499670  T
Q  141 acctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctctgaa 236  Q
    |||||||||||||||| | || || || |||  ||||||| ||||| | || | ||||| |||| |||| ||| ||||||||| ||||||| ||||    
T  23499671 acctaaaacttttaaagccagagggttacctttgcaataggcaattacactatctgatacatcttcatatccagttttaggatgtttttctttgaa 23499766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 23386879 - 23386997
Alignment:
Q  135 atttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctctg 234  Q
    |||| ||||||||||||||||| | |  || ||||||| ||||||| ||||| | |||| ||||| |||| |||| ||||||||||| | |||||||| |    
T  23386879 atttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaattacactttctgatatatcttcatatccaattttaggctgtttttctccg 23386978  T
Q  235 aaagcctccaaacagaata 253  Q
    || || | ||||| |||||    
T  23386979 aaggcattcaaactgaata 23386997  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 23405253 - 23405350
Alignment:
Q  135 atttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctc 232  Q
    |||| ||||||||||||||||| | |  || ||||||| ||||||| ||||| | ||||  ||||||||| |||| ||||||||||| | ||||||||    
T  23405253 atttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaattacactttcagatagatcttcatatccaattttaggctgtttttctc 23405350  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 23463884 - 23463981
Alignment:
Q  135 atttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctc 232  Q
    |||| ||||||||||||||||| | |  || ||||||| ||||||| ||||| | ||||  ||||||||| |||| ||||||||||| | ||||||||    
T  23463884 atttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaattacactttccgatagatcttcatatccaattttaggctgtttttctc 23463981  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 23401675 - 23401766
Alignment:
Q  141 acctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttaggatatttttctc 232  Q
    |||||||||||||| | | ||  ||||||||  ||||||| ||||| | |||| |||||||||| |||| ||| ||||||||| ||||||||    
T  23401675 acctaaaacttttatagccagatgattgcctttgcaataggcaattacactttctgatagatcttcatatccagttttaggatgtttttctc 23401766  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 23440525 - 23440603
Alignment:
Q  142 cctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattttag 220  Q
    ||||||||||||||| | || |||||||||  ||||||| ||||| | |||| |||||||||| || | ||||||||||    
T  23440525 cctaaaacttttaaagccagaggattgcctttgcaataggcaattacactttctgatagatcttcacatccaattttag 23440603  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 12896484 - 12896270
Alignment:
Q  18 ctgagtacaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttct 117  Q
    |||||||| ||||||  |||| ||||| |||||||||||||||||||| || | ||  || |||||||| | |||||||| ||||||| ||||  |||||    
T  12896484 ctgagtacgatctaagtcatcgaaactcaattttaacacatcatgaattctcccataaggaatcttttttatcttttccaattcacttgcccatgcttct 12896385  T
Q  118 ttgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttgatagatctccatacccaattt 217  Q
    |||||||| ||||||||||||| |||||||||||| ||| | |||||||||||||  |||||| ||||||| || |||||||||||  |||| |||  ||    
T  12896384 ttgctttttgtacgaaaatttgcacctaaaactttcaaagccaggggattgcctctacaatagccaattgcactctttgatagatcctcatatccatctt 12896285  T
Q  218 taggatatttttctc 232  Q
    |||||| ||||||||    
T  12896284 taggatgtttttctc 12896270  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 16122248 - 16122426
Alignment:
Q  19 tgagtacaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttctt 118  Q
    ||||||| ||||||  |||  ||||| |||||||||||||||||||| | |  ||  || |||| ||| | |||||||| ||||||||||||  ||||||    
T  16122248 tgagtacgatctaagtcatagaaactcaattttaacacatcatgaattcctgcataaggaatctcttttatcttttccaattcactttcccatgcttctt 16122347  T
Q  119 tgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttga 197  Q
    ||||||| | || || ||| | |||||||||||| ||| |||| |||||||||| ||||||  ||||||| ||||||||    
T  16122348 tgctttttgcacaaagattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgcactttttga 16122426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 16336952 - 16336774
Alignment:
Q  19 tgagtacaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttctt 118  Q
    ||||||| ||||||  |||  ||||| | |||||||||||||||||| | |  ||  || |||| ||| | |||||||| ||||||||| ||  ||||||    
T  16336952 tgagtacgatctaagtcatagaaactcagttttaacacatcatgaattcctgcataaggaatctcttttatcttttccaattcactttcacatgcttctt 16336853  T
Q  119 tgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagtcaattgctctttttga 197  Q
    ||||||| | ||||||||| | |||||||||||| ||| |||| |||||||||| ||||||  ||||||| ||||||||    
T  16336852 tgctttttgcacgaaaattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgcactttttga 16336774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 11992 - 12166
Alignment:
Q  79 atctttttgagcttttccagttcactttcccacacttctttgcttttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaat 178  Q
    |||||||||||||||| || |||| |||||||  | ||||||| | | | ||| | |||||  |||| |||||||||| |||| |||||||||  |||||    
T  11992 atctttttgagctttttcaattcattttcccatgcctctttgcctcttgaacggagatttgcccctataacttttaaagctagaggattgcctttgcaat 12091  T
Q  179 agtcaattgctctttttgatagatctccatacccaattttaggatatttttctctgaaagcctccaaacagaata 253  Q
    ||  |||| | |||| |||||||||| |||| ||||||||||| | |||||||| ||| || | ||||| |||||    
T  12092 aggaaattacactttctgatagatcttcatatccaattttaggctgtttttctccgaaggcattcaaactgaata 12166  T

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