View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_39 (Length: 262)
Name: NF16661_high_39
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 4239746 - 4239517
Alignment:
| Q |
11 |
catcatcaagcaatcatcaacaacaactctataattcatcaagtgagtcagttatggtggattcaagcagtgcacgtgacacaaatttatcatcatcctt |
110 |
Q |
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| T |
4239746 |
catcatcaagcaatcatcaacaacaactctataattcatcaagtgagtcagttatggtggattcaagcagtgcacgtgacacaaatttatcatcatcctt |
4239647 |
T |
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| Q |
111 |
ggagctggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatgatcaacacaactgct |
210 |
Q |
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| T |
4239646 |
ggagctggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaa---tgatcaacacaa---ct |
4239553 |
T |
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| Q |
211 |
gctactgttgccacaactccaataatgagaccaaac |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4239552 |
gctactgttgccacaactccaataatgagaccaaac |
4239517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 19921810 - 19921686
Alignment:
| Q |
116 |
tggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatgatcaacacaactgctgctac |
215 |
Q |
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| T |
19921810 |
tggaagatagcagcaaaaagaatagttacgggtctgagaaatggatgtcttcaaagatgaggttaatgaataaaa---tgatcaacacaa---ctgctat |
19921717 |
T |
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| Q |
216 |
tgttgccacaactccaataatgagaccaaac |
246 |
Q |
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| T |
19921716 |
tgttaccacaactccaataatgagactaaac |
19921686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 19938669 - 19938545
Alignment:
| Q |
116 |
tggaagatagcagcaaaaagaacagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatgatcaacacaactgctgctac |
215 |
Q |
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|||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
19938669 |
tggatgatagcaataaaaagaatagtcacgggtctgagaaatggatatcttcaaagatgaggttgatgaataaaatgatga---acacaacttct---ac |
19938576 |
T |
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| Q |
216 |
tgttgccacaactccaataatgagaccaaac |
246 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
19938575 |
agttaccacaactccaataatgagaccaaac |
19938545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 19938720 - 19938667
Alignment:
| Q |
11 |
catcatcaagcaatcatcaacaacaactctataattcatcaagtgagtcagttatgg |
67 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
19938720 |
catcatcaagcaatcaccaacaac---tctataattcatcatgtgagtcagttatgg |
19938667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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