View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_41 (Length: 252)
Name: NF16661_high_41
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_41 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 36024642 - 36024403
Alignment:
| Q |
13 |
caaaggtgtacgtaatcaacttttttctaaattgtcggagcttcatcctgatgcacataatctagaaaccacaatttccatgagaagacttgcatgtaaa |
112 |
Q |
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| T |
36024642 |
caaaggtgtacgtaatcaacttttttctaaattgttggagcttcgtcccgatgcacctaatctagaaaccacaatttccatgagaagacttgtatgtaaa |
36024543 |
T |
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| Q |
113 |
nnnnnnnnaattgtattggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36024542 |
aaaagtttaattgtattggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtca |
36024443 |
T |
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| Q |
213 |
caactagagataagcaggtatgtagccaatttaataaatg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36024442 |
caactagagataagcaggtatgtagccaatttaataaatg |
36024403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 128 - 252
Target Start/End: Complemental strand, 36003430 - 36003306
Alignment:
| Q |
128 |
ttggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtcacaactagagataagc |
227 |
Q |
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|||||||||||| ||||||||||||||| |||| ||||||||||| ||||| ||| || ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
36003430 |
ttggatgatgtgacaaccttagagcaagtggaaattcttaacatagataatatttgtttgggaccgggtagtagaatcattgtcacaactagagataagc |
36003331 |
T |
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| Q |
228 |
aggtatgtagccaatttaataaatg |
252 |
Q |
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| T |
36003330 |
agatatgtaaccaatttaatgaatg |
36003306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 23448129 - 23448086
Alignment:
| Q |
186 |
taggaccaggtagtagagtcattgtcacaactagagataagcag |
229 |
Q |
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| T |
23448129 |
taggaccaggtagtagggtcattattacaactagagataagcag |
23448086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 23479416 - 23479376
Alignment:
| Q |
188 |
ggaccaggtagtagagtcattgtcacaactagagataagca |
228 |
Q |
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| T |
23479416 |
ggaccaggtagtagggtcattattacaactagagataagca |
23479376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 23499895 - 23499855
Alignment:
| Q |
188 |
ggaccaggtagtagagtcattgtcacaactagagataagca |
228 |
Q |
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| T |
23499895 |
ggaccaggtagtagggtcattattacaactagagataagca |
23499855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 12895970 - 12896177
Alignment:
| Q |
21 |
tacgtaatcaacttttttctaaattgtcggagcttcatcctgatgcacataatctagaaaccacaatttccatgagaagacttgcatgtaaannnnnnnn |
120 |
Q |
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||||||| |||||||||||| ||||| |||||||| || |||||||| | || |||||||| |||| | ||| ||||||||||||||| || |
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| T |
12895970 |
tacgtaacaaacttttttctacattgttggagcttcgtcttgatgcaccttatgtagaaaccccaatgttcataagaagacttgcatgtgaaaaaagttt |
12896069 |
T |
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| Q |
121 |
aattgtattggatgatgtggcaaccttagagcaagcagaaaatcttaacatagttaataattgcttaggaccaggtagtagagtcattgtcacaactaga |
220 |
Q |
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| T |
12896070 |
cattgtattggatgatgtggcaaccttagagcaagcagaatatcttaacataggtaaaaattgtttaggccctggtagtagagtcatcgtcacaactaga |
12896169 |
T |
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| Q |
221 |
gataagca |
228 |
Q |
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|||||||| |
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| T |
12896170 |
gataagca |
12896177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 16122594 - 16122558
Alignment:
| Q |
188 |
ggaccaggtagtagagtcattgtcacaactagagata |
224 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
16122594 |
ggaccaggtagtagagtcattgtcacaacaagagata |
16122558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 16122651 - 16122608
Alignment:
| Q |
122 |
attgtattggatgatgtggcaaccttagagcaagcagaaaatct |
165 |
Q |
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| T |
16122651 |
attgtgttggacgatgttgcaaccttagagcaagcagaaaatct |
16122608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 16336549 - 16336592
Alignment:
| Q |
122 |
attgtattggatgatgtggcaaccttagagcaagcagaaaatct |
165 |
Q |
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| T |
16336549 |
attgtgttggacgatgttgcaaccttagagcaagcagaaaatct |
16336592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 16336606 - 16336642
Alignment:
| Q |
188 |
ggaccaggtagtagagtcattgtcacaactagagata |
224 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
16336606 |
ggactaggtagtagagtcattgtcacaacaagagata |
16336642 |
T |
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