View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_46 (Length: 244)
Name: NF16661_high_46
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20575822 - 20576046
Alignment:
| Q |
1 |
ctaacatgatcatagccaaatccacgatatgtggtaatgcattgattatattcataacaatcaagggtgggagattttttggatatcaatctaattgaag |
100 |
Q |
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| T |
20575822 |
ctaacatgatcatagccaaatccacgatatgtggtaatgcattgattatattcataacaatcaagggtgggagattttttggatatcaatctaattgaag |
20575921 |
T |
|
| Q |
101 |
ggttcaacagtcgaaaacaaccatgatccctatcaaatagacacaacaacccattgcatgaaccaaaaatagtaaaactgtcatctaggtcgaactcaac |
200 |
Q |
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| T |
20575922 |
ggctccagagtcgaaaacaaccatgatccctatcaaatagacacaacaacccaatgcatgaaccaaaaatagtaaaactgtgatctaggtcgaactcaac |
20576021 |
T |
|
| Q |
201 |
ggcttttgtaggttctaatgagtct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
20576022 |
ggcttttgtaggttctaatgagtct |
20576046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20578527 - 20578741
Alignment:
| Q |
1 |
ctaacatgatcatagccaaatccacgatatgtggtaatgcattgattatattcataacaatcaagggtgggagattttttggatatcaatctaattgaag |
100 |
Q |
| |
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| T |
20578527 |
ctaacatgatcatagccaaatccaccatatgtggta------------tattcataacaaccaagggtgggagattttttggatatcaatctaattaaag |
20578614 |
T |
|
| Q |
101 |
ggttcaacagtcgaaaacaaccatgatccctatcaaatagacacaacaacccattgcatgaaccaaaaatagtaaaactgtcatctaggtcgaactcaac |
200 |
Q |
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| T |
20578615 |
ggttccacagtcgaaaacaaccatgatccctatcaaatagacacaacaacccattgcatgaaccaaaaatagtaaaactatgatctaggtcaaactcaac |
20578714 |
T |
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| Q |
201 |
ggcttttgtaggttctaatgagtcttt |
227 |
Q |
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| T |
20578715 |
ggcttttgtaggttttaatgagtcttt |
20578741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 20585648 - 20585812
Alignment:
| Q |
4 |
acatgatcatagccaaatccacgatatgtggtaatgcattgattatattcataacaatcaagggtgggagattttttggatatcaatctaattgaagggt |
103 |
Q |
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| T |
20585648 |
acatgatcatagccaaagccatcatatgtg---atccatttatcatcatcataacaatcaagggttggagattttttggatttccattcgatagaagggt |
20585744 |
T |
|
| Q |
104 |
tcaacagtcgaaaacaaccatgatccctatcaaatagacacaacaacccattgcatgaaccaaaaata |
171 |
Q |
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| T |
20585745 |
tcaacagtctaacataacctttattgacagaaaatagacacaacaacccattgcatgaaccaagaata |
20585812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 20596644 - 20596680
Alignment:
| Q |
135 |
aaatagacacaacaacccattgcatgaaccaaaaata |
171 |
Q |
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| T |
20596644 |
aaatagacacaacaacccattgcatgaaccaaaaata |
20596680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 20611845 - 20611966
Alignment:
| Q |
50 |
attcataacaatcaagggtgggagattttttggatatcaatctaattgaagggttcaacagtcgaaaacaaccatgatccctatcaaatagacacaacaa |
149 |
Q |
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|||||||| |||||||||| ||||||||||||||| || || || ||||||||||||| || || | |||| | | | ||||||||||||||| |
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| T |
20611845 |
attcataagaatcaagggttggagattttttggatttccattcgatagaagggttcaacaatctaacataaccttctttgacaaaaaatagacacaacaa |
20611944 |
T |
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| Q |
150 |
cccattgcatgaaccaaaaata |
171 |
Q |
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| T |
20611945 |
cccattgcatgaaccaagaata |
20611966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 20604127 - 20604163
Alignment:
| Q |
135 |
aaatagacacaacaacccattgcatgaaccaaaaata |
171 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
20604127 |
aaatagacacaacaacccattgcatgaaccaagaata |
20604163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 20894994 - 20894892
Alignment:
| Q |
4 |
acatgatcatagccaaatccacgatatgtggtaatgcattgattatattcataacaatcaagggtgggagattttttggatatcaatctaattgaagggt |
103 |
Q |
| |
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||||||||||||||||| ||| ||||||| || |||| || || ||||||||||||||||| ||||||||||||||| || || || ||||||| |
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| T |
20894994 |
acatgatcatagccaaagccatcatatgtg---atccatttatgatcatcataacaatcaagggttggagattttttggatttccattcgatagaagggt |
20894898 |
T |
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| Q |
104 |
tcaaca |
109 |
Q |
| |
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|||||| |
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| T |
20894897 |
tcaaca |
20894892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 20894866 - 20894830
Alignment:
| Q |
135 |
aaatagacacaacaacccattgcatgaaccaaaaata |
171 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||| |
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| T |
20894866 |
aaatagacacaacagcccattgcatgaaccaagaata |
20894830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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