View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_54 (Length: 232)
Name: NF16661_high_54
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 46054973 - 46054768
Alignment:
| Q |
14 |
atcattgtggaaaactagtacagaggaagtttattgcatttgaagttatacaaactttgtatacatctatttccttcattcaaatggtacttggaaatga |
113 |
Q |
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| T |
46054973 |
atcattgtggaaaactagtacagaggaagtttattgcatttgaagttatacaatctttgtatacatctatttccttcattcaaatggtacttggaaatga |
46054874 |
T |
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| Q |
114 |
gaaggagaagatgtttgattttgttttcttgaacactgaaagttttgatttacaagggcagccggtactggattacattgacagggatttgagattggtt |
213 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46054873 |
gagggagaagatgtttgattttgttttcttgaacactgaaagttttgatttgcaagggcagccggtactggattacattgacagggatttgagattggtt |
46054774 |
T |
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| Q |
214 |
catatc |
219 |
Q |
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|||||| |
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| T |
46054773 |
catatc |
46054768 |
T |
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