View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_55 (Length: 231)
Name: NF16661_high_55
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 47918374 - 47918591
Alignment:
| Q |
1 |
ccacccatgtaacatgcaaccccaaatttattatatgcttcttctccactacccatttgtgttccagtgtgaggagnnnnnnngacctcataactaaaca |
100 |
Q |
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| T |
47918374 |
ccacccatgtaacatgcaaccccaaatttattatatgcttcttctccactacccatttgtgttccagtgtgaggagtttttttgacctcataactaaaca |
47918473 |
T |
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| Q |
101 |
cttgtccaccccattgaaccaatgatgcagaactttgtaggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagcca |
200 |
Q |
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| T |
47918474 |
cttgtccaccccattgaaccaatgatgcagaactttgtaggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagcca |
47918573 |
T |
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| Q |
201 |
ccagtttccagaattatc |
218 |
Q |
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| T |
47918574 |
ccagtttccagaattatc |
47918591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 47928178 - 47928345
Alignment:
| Q |
43 |
tctccactacccatttgtgttccagtgtgaggagnnnnnnn---gacctcataactaaacacttgtccaccccattgaaccaatgatgcagaactttgta |
139 |
Q |
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| T |
47928178 |
tctccactacccatctgtgttcctgtgtgaggaggttttgttttgacctcataactaaacacttgtccaccccattgaatcaatgttgcactgtgtctta |
47928277 |
T |
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| Q |
140 |
ggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagttt |
207 |
Q |
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| T |
47928278 |
aattacctaataactctgctggccaataacctacagggatgttattcttcactttaaaccaccagttt |
47928345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 47946747 - 47946920
Alignment:
| Q |
36 |
tgcttcttctccactacccatttgtgttccagtgtgaggagnnnnnnng---acctcataactaaacacttgtccaccccattgaaccaatgatgcagaa |
132 |
Q |
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| T |
47946747 |
tgctgcttctccactacccatttgtgttcctgtgtgaggaggggttgttttcacattataactaaacacttgtccaccccattgaaccaatgttgcacta |
47946846 |
T |
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| Q |
133 |
ctttgtaggttactcactaactcttttggccaataacctacaggaatgttattcttcactttaagccaccagtt |
206 |
Q |
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| T |
47946847 |
tgttgtaagttacccactatcgctgctggccaataacctacaatgattttatccttcattctaagccaccagtt |
47946920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 47909233 - 47909283
Alignment:
| Q |
26 |
atttattatatgcttcttctccactacccatttgtgttccagtgtgaggag |
76 |
Q |
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| T |
47909233 |
atttattatatgcttcttctccactccccatttgtgttcctgtgtgaggag |
47909283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 47935605 - 47935701
Alignment:
| Q |
36 |
tgcttcttctccactacccatttgtgttccagtgtgaggagnnnnnnn---gacctcataactaaacacttgtccaccccattgaaccaatgatgca |
129 |
Q |
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| T |
47935605 |
tgcttcttctccactacccatctgtgttcctgtgtgaggaggggtagttttgacctgataactaaacacttgtcctccccattgaaccaatgttgca |
47935701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 47909369 - 47909417
Alignment:
| Q |
159 |
tggccaataacctacaggaatgttattcttcactttaagccaccagttt |
207 |
Q |
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| T |
47909369 |
tggccaataacctactggtatattattcttaattttaagccaccagttt |
47909417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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