View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_8 (Length: 533)

Name: NF16661_high_8
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_8
NF16661_high_8
[»] chr4 (4 HSPs)
chr4 (11-517)||(14349930-14350437)
chr4 (317-363)||(18404845-18404891)
chr4 (314-363)||(16581761-16581810)
chr4 (314-358)||(51954187-51954231)
[»] chr2 (3 HSPs)
chr2 (314-370)||(35203342-35203398)
chr2 (315-348)||(31159597-31159630)
chr2 (314-363)||(42222949-42222998)
[»] chr1 (4 HSPs)
chr1 (314-349)||(40257481-40257516)
chr1 (317-354)||(7129616-7129653)
chr1 (314-347)||(31297307-31297340)
chr1 (314-346)||(10526908-10526940)
[»] chr8 (2 HSPs)
chr8 (371-424)||(18897164-18897217)
chr8 (317-365)||(6569733-6569781)
[»] chr7 (2 HSPs)
chr7 (314-347)||(15905633-15905666)
chr7 (391-424)||(42295106-42295139)
[»] chr6 (1 HSPs)
chr6 (314-343)||(20678038-20678067)
[»] chr3 (1 HSPs)
chr3 (314-370)||(49397500-49397556)


Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Original strand, 14349930 - 14350437
Alignment:
Q  11 agatgaataataggaatataatagagggatattgatgtagaaacgacctctcataatgtttatgattttagtagctctcacttactgaattatacacatc 110  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14349930 agataaataacaggaatataatagagggatattgatgtagaaacgacctctcataatgtttatgattttagtagctctcacttactgaattatacacatc 14350029  T
Q  111 acatgtattcatattgcgaacaaactaactcagttgtatctaagtttaaactaagtttgtaacaactattaactaactacaataaaaatgtgatatgtaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350030 acatgtattcatattgcgaacaaactaactcagttgtatctaagtttaaactaagtttgtaacaactattaactaactacaataaaaatgtgatatgtaa 14350129  T
Q  211 atctaactatcaattgaaaacata-tctttatcacatcttgacatcttagtataaaatgtaaaccgaattatttggtgtgcccctcccgaatcagtaaca 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350130 atctaactatcaattgaaaacataatctttatcacatcttgacatcttagtataaaatgtaaaccgaattatttggtgtgcccctcccgaatcagtaaca 14350229  T
Q  310 cgtattgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagacgagcaaactctaatctcccaaaccaacaccactaaccca 409  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350230 cgtattgaagaagttaaattaacccacccaaattgacacctgagataatagaacatcagacgagcaaactctaatctcccaaaccaacaccactaaccca 14350329  T
Q  410 actcaagtgggtttaacagatagagtatcgagggctatcattgccgtttggttcaagcattcaactttccaccttgtactcctataactcttgaattcaa 509  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350330 actcaagtgggtttaacagatagaatatcgagggctatcattgccgtttggttcaagcattcaactttccaccttgtactcctataactcttgaattcaa 14350429  T
Q  510 cctcaaaa 517  Q
    ||||||||    
T  14350430 cctcaaaa 14350437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 18404845 - 18404891
Alignment:
Q  317 aagaagctaaactaacccacccaaattgacacctaagataatagaac 363  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  18404845 aagaagctaaactaacccacttaaattgacaccttagataatcgaac 18404891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 16581810 - 16581761
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaac 363  Q
    ||||||||||||||||||||| | ||||||| ||||  ||||||||||||    
T  16581810 ttgaagaagctaaactaaccctctcaaattggcaccagagataatagaac 16581761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 51954231 - 51954187
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgacacctaagataat 358  Q
    |||||||||||||| || ||||||||||||||||||  |||||||    
T  51954231 ttgaagaagctaaattagcccacccaaattgacaccggagataat 51954187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 35203342 - 35203398
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagac 370  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||| |||||| ||||    
T  35203342 ttgaagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagac 35203398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 31159597 - 31159630
Alignment:
Q  315 tgaagaagctaaactaacccacccaaattgacac 348  Q
    |||||||||||||||| |||||||||||||||||    
T  31159597 tgaagaagctaaactagcccacccaaattgacac 31159630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 42222998 - 42222949
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaac 363  Q
    |||||||| ||||| ||||||||||||||||||||| |||| ||| ||||    
T  42222998 ttgaagaatctaaattaacccacccaaattgacaccgaagagaatcgaac 42222949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 349
Target Start/End: Complemental strand, 40257516 - 40257481
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgacacc 349  Q
    ||||||||||||||||| ||||||||||||||||||    
T  40257516 ttgaagaagctaaactagcccacccaaattgacacc 40257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 7129616 - 7129653
Alignment:
Q  317 aagaagctaaactaacccacccaaattgacacctaaga 354  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  7129616 aagaagctaaactaacccacctaaattgacaccgaaga 7129653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 31297340 - 31297307
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgaca 347  Q
    ||||||||| ||||||||||||||||||||||||    
T  31297340 ttgaagaagttaaactaacccacccaaattgaca 31297307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 10526940 - 10526908
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgac 346  Q
    |||||||||||||| ||||||||||||||||||    
T  10526940 ttgaagaagctaaattaacccacccaaattgac 10526908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 18897217 - 18897164
Alignment:
Q  371 gagcaaactctaatctcccaaaccaacaccactaacccaactcaagtgggttta 424  Q
    ||||| |||||||  |||||||||||||||||||  ||||| ||||||||||||    
T  18897217 gagcacactctaaggtcccaaaccaacaccactaggccaacccaagtgggttta 18897164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 6569733 - 6569781
Alignment:
Q  317 aagaagctaaactaacccacccaaattgacacctaagataatagaacat 365  Q
    |||||||||||||||||| | |||||||||||| |||| ||| ||||||    
T  6569733 aagaagctaaactaaccccctcaaattgacaccaaagagaatcgaacat 6569781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 15905633 - 15905666
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgaca 347  Q
    |||||||||||||| |||||||||||||||||||    
T  15905633 ttgaagaagctaaattaacccacccaaattgaca 15905666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 42295106 - 42295139
Alignment:
Q  391 aaccaacaccactaacccaactcaagtgggttta 424  Q
    ||||||||||||||| ||||||||||||||||||    
T  42295106 aaccaacaccactaaaccaactcaagtgggttta 42295139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 343
Target Start/End: Original strand, 20678038 - 20678067
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaatt 343  Q
    ||||||||||||||||||||||||||||||    
T  20678038 ttgaagaagctaaactaacccacccaaatt 20678067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 49397500 - 49397556
Alignment:
Q  314 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagac 370  Q
    |||||||||||||| ||  ||||| ||||||||| |||||||||| |||||| ||||    
T  49397500 ttgaagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagac 49397556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University