View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_9 (Length: 524)
Name: NF16661_high_9
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Original strand, 33750424 - 33750920
Alignment:
| Q |
16 |
aagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacatttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750424 |
aagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacatttt |
33750523 |
T |
|
| Q |
116 |
ccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750524 |
ccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaa |
33750623 |
T |
|
| Q |
216 |
gcagtcagaagtggttgctcctgatttagagaatgtaaaag------atgagaatgagaacgagaatatgaatcaagaaattcaaagtgagacaaatatg |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33750624 |
gcagtcagaagtggttgctcctgatttagagaatgtaaaagatgagaatgagaatgagaacgagaatatgaatcaagaaatgcaaagtgagacaaatatt |
33750723 |
T |
|
| Q |
310 |
ggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750724 |
ggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtggagattcttctg |
33750823 |
T |
|
| Q |
410 |
attccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggt |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750824 |
attccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttgtgtaaattagtgcgtgtttgaccgaggttaaggt |
33750920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 33718954 - 33719153
Alignment:
| Q |
19 |
aagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttcca |
118 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||| |
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| T |
33718954 |
aagaagtatagaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttacca |
33719053 |
T |
|
| Q |
119 |
cggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagca |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||| | |||||||| || |||||||| |
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| T |
33719054 |
cggcggaggaagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagca |
33719153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 33735624 - 33735824
Alignment:
| Q |
16 |
aagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacatttt |
115 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||| |
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|
| T |
33735624 |
aagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaaccttta |
33735723 |
T |
|
| Q |
116 |
ccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||| | |||||||| || ||||| |
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|
| T |
33735724 |
ccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaa |
33735823 |
T |
|
| Q |
216 |
g |
216 |
Q |
| |
|
| |
|
|
| T |
33735824 |
g |
33735824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 33720976 - 33721171
Alignment:
| Q |
22 |
aagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacgg |
121 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||||| |
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|
| T |
33720976 |
aagtacagaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacgg |
33721075 |
T |
|
| Q |
122 |
cggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagc |
217 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||||| || ||||||||| | |||||||| || ||||||| |
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|
| T |
33721076 |
cggaggaagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaagc |
33721171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 269 - 433
Target Start/End: Original strand, 33735871 - 33736035
Alignment:
| Q |
269 |
acgagaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttca |
368 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||||||||||| || ||||| | ||||||||||||||||||| | || ||| |||||||||| |
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|
| T |
33735871 |
acgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttca |
33735970 |
T |
|
| Q |
369 |
acaactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacactttta |
433 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||| |
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|
| T |
33735971 |
acaactaatgaggtttatggattttgatagagattcttctgactcaagaacatggaacactttta |
33736035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 271 - 466
Target Start/End: Original strand, 33719203 - 33719398
Alignment:
| Q |
271 |
gagaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaac |
370 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| | ||| |||| |||||||| |||||||||||||| |||||| |||| ||| |||||||||||| |
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|
| T |
33719203 |
gagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttttggatagcattggtgaacctgattttcaac |
33719302 |
T |
|
| Q |
371 |
aactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagt |
466 |
Q |
| |
|
|| | |||| ||||||||| ||| |||||||||||||| ||| || || ||||| |||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
33719303 |
aatttatgaagtttatggaattttctggagattcttctggttctaggacagggaatccttttaattagttcatgaattcaacaacaaatgaacagt |
33719398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 468
Target Start/End: Original strand, 33721214 - 33721392
Alignment:
| Q |
284 |
aagaaattcaaagtgagacaaatatgggatttgggaataatatg---gattgtgatttttgggataggcttggggaaa---ctgattttcaacaactgat |
377 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||||||| || |
|
|
| T |
33721214 |
aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttat |
33721313 |
T |
|
| Q |
378 |
gaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagtta |
468 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| || |||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
33721314 |
gaggtttatg------------gattcttctcattctagaacaggaaacacttttaattagttcctcaattcaacaacaacagaacagtta |
33721392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
| Q |
28 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
80 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6583050 |
agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc |
6583102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
| Q |
28 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc |
80 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
6568891 |
agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 32575066 - 32575155
Alignment:
| Q |
310 |
ggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtgga |
399 |
Q |
| |
|
|||||| | ||| ||||||||||||| |||||||||| | |||||||| ||| |||| ||| | |||||||||||||||||||||||| |
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|
| T |
32575066 |
ggatttagaaatgatatggattgtgaattttgggatatgattggggaaggtgaatttcggcaagttatgaggtttatggattttggtgga |
32575155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 13409875 - 13409921
Alignment:
| Q |
25 |
tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaat |
71 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
13409875 |
tacagaggagtgagacaaagaccatggggaaaatgggcagcagaaat |
13409921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 44331930 - 44331866
Alignment:
| Q |
11 |
gagagaagaagaag-tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcg |
74 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||| |
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|
| T |
44331930 |
gagagaagaagaagatacagaggagtaagacagagaccatggggaaaatgggcagcagaaattcg |
44331866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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