View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_11 (Length: 493)
Name: NF16661_low_11
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 30074651 - 30074188
Alignment:
| Q |
19 |
aaaaggctctcaagctcagactccagctctttacatttttcacctattgtgctagtagattcttccttagtataaaggtcggattcaagtatcagaatcc |
118 |
Q |
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| T |
30074651 |
aaaaggctctcaagctcagactccagctctttacatttttcacctattgtgctagtagattcttccttagtataaaggtcggattcaagtatcagaatcc |
30074552 |
T |
|
| Q |
119 |
tgccatccctttcttcaagatcgcacttcaatcggtataacttattttccaaaatgtctattttttctgtcaggcttgctatttgaagctccctggaact |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074551 |
tgccatccctttgttcaagatcgcacttcaatcggtataacttattttccaaaatgtctattttttctgtcaggcttgctatttgaagctccctggaact |
30074452 |
T |
|
| Q |
219 |
tgatgaattttgttcatcagaatggccggatgagcatgaatcatgaaattgtagatcaacagcacttggtccagcagcttcacttctacatttggttgag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30074451 |
tgatgaattttgttcatcagaatggccggatgagcatgaatcatgaaattctagatcaacagcacttggtccagcagcttcacttctacatttgattgag |
30074352 |
T |
|
| Q |
319 |
ccatcatcgtcatgtgaggaactttcattcccaatctccttgaatttttcaatttctgcaagagacgcatattggttatgaagagttcacagaatgcaat |
418 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074351 |
ccattatcatcatgtgaggaactttcattcccaatctccttgaatttttcaatttctgcaagagacgcatattggttatgaagagttcacagaatgcaat |
30074252 |
T |
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| Q |
419 |
gacacacaccacacttccaataaagacactattgcagaggccaaaaacttcttttaactttcat |
482 |
Q |
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| T |
30074251 |
gacacacaccacacttccaataaagacactattgcagaggccaaaaacttcttttaactttcat |
30074188 |
T |
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Back To:
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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 21465639 - 21465572
Alignment:
| Q |
255 |
tgaatcatgaaattgtagatcaacagcacttggtccagcagcttcacttctacatttggttgagccat |
322 |
Q |
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||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21465639 |
tgaatcatggaattctagatcaacaacacttggtccagcagcttcacttctacatttggttgagccat |
21465572 |
T |
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