View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_13 (Length: 454)
Name: NF16661_low_13
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 50539249 - 50539679
Alignment:
| Q |
8 |
gattattcttgttcatggtggaaaaattaaccaatatttttagggttagggttttgccttaattgttacaatgcttagcttgcatgttgtgatcaatctc |
107 |
Q |
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| T |
50539249 |
gattgttcttgttcatggtggaaaaattaaccaatatttttagggttagggttttgccttaattgttacaatgcttagcttgcatgttgtgatcaatctc |
50539348 |
T |
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| Q |
108 |
ttcttttccaactctatagagactttatggggaaagggagacaagatcacgtaagttgattaattagaagagatgaaaattaactttgtgttatgattgc |
207 |
Q |
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| T |
50539349 |
ttcttttccaactctatagagactttatggggaaagggagacaagatcacgtaagttgattaattagaagagatgaaaattaactttgtgttatgattgc |
50539448 |
T |
|
| Q |
208 |
cccatgacatgacacaatacattcagtatgaaaaagcaagcaacatgattacaagagcatagctagtagtaccgtttagctttttgtatatgatggcctt |
307 |
Q |
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| T |
50539449 |
cccatgacatgacacaatacattaagtatgaaaaagcaagcaacatgattacaagagcatagctagtagtaccgtttagctttttgtatatgatggcctt |
50539548 |
T |
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| Q |
308 |
ttctcatcatcttaccctataagctatatacaaagatgggcttctaccattcaatcatgatgtgtatttcctaagagggaaatagcaagagcatggctcg |
407 |
Q |
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| T |
50539549 |
ttctcatcatcttaccctataagctatatacgaagatgggcttctaccattcaatcatgatgtgtatttcctaagagggaaatagcaagagcatggctcg |
50539648 |
T |
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| Q |
408 |
tttcatgttgatggcaaaaggtagatgatgt |
438 |
Q |
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| T |
50539649 |
tttcttgttgatggcaaaaggtagatgatgt |
50539679 |
T |
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