View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_15 (Length: 444)
Name: NF16661_low_15
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 7421425 - 7421048
Alignment:
| Q |
18 |
catccaagatatatagtaaggaaacatttaaaacgatgaacagaggcagttgcataagaacccaaattatcaacatatatgaaccaaatcaaacaatgct |
117 |
Q |
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| T |
7421425 |
catccaagatatatagtaaggaaacatttaaaacgatgaacagaggcagttgcatgagaacccaacttatctacat----gaaccaaatcaaacaatgct |
7421330 |
T |
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| Q |
118 |
ttccttaaaaataaaattatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatggtatttgggtggttactaaaataatttta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7421329 |
ttccttaaaaataaaattatcaaaaatgctggtggttgaattctaattttcttccaaaatatcacatcatggtatttgggtggttactaacataatttta |
7421230 |
T |
|
| Q |
218 |
ggcttatctgtttcctcatcttttaaataattatttcgttgcgatcgggaaatcgtattgtaagatagtttaggtttggatcatattgggcctaagtcaa |
317 |
Q |
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| T |
7421229 |
ggcttatccgtttcctcatcttttaaataattattttgttgcgatcgggaaatcgtattgtaagatagtttaggtttggattatattgggcctaagtcaa |
7421130 |
T |
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| Q |
318 |
atatttttagatgtacatgcgaaagtcactttgatgttaaaatcaggtaccttttccgtcccaaaataaatgtgtcatttgt |
399 |
Q |
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| T |
7421129 |
atatttttagatgtacatgtgaaagtcactttgatgttaaaatcaggtactttttccgtcccaaaataaatgtgttatttgt |
7421048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 134 - 367
Target Start/End: Complemental strand, 13574023 - 13573791
Alignment:
| Q |
134 |
ttatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatggtatttgggtggttactaaaataattttaggcttatctgtttcct |
233 |
Q |
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| T |
13574023 |
ttatcaaagatgctggtggttgaattctaattttcttccttaatataatatcatgctatttgggtgattactagcgtaa-tataggcttatctggttcct |
13573925 |
T |
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| Q |
234 |
catcttttaaataattatttcgttgcgatc-gggaaatcgtattgtaagatagtttaggttt-ggatcatattgggcctaagtcaaatatttttagatgt |
331 |
Q |
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||||||| ||||||| |||| ||||| | | |||||||||||||||| || |||||| |||| || |||||||| || ||||| || ||||| | ||| |
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| T |
13573924 |
catctttgaaataatgattttgttgcaaacagggaaatcgtattgtatgagagtttaagtttgggctcatattgagcttaagttaa--attttgatatgg |
13573827 |
T |
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| Q |
332 |
acatgcgaaagtcactttgatgttaaaatcaggtac |
367 |
Q |
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| T |
13573826 |
acatgtaaaggttactttgatgttaaaatcaggtac |
13573791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 14202129 - 14202065
Alignment:
| Q |
130 |
aaaattatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatggtattt |
194 |
Q |
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| T |
14202129 |
aaaaatatcaaagatgctagtggttgaattctaaatttcttcctaaatatgacatcatggtattt |
14202065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 13567957 - 13567904
Alignment:
| Q |
135 |
tatcaaaaatgctggtggttgaattctaattttcttcctaaatatcacatcatg |
188 |
Q |
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| T |
13567957 |
tatcaaagatgctagtggttgaattttaattttcttcataaatatgacatcatg |
13567904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 3923733 - 3923792
Alignment:
| Q |
143 |
atgctggtggttgaattctaattttcttcctaaatatcacatcatggtatttgggtggtt |
202 |
Q |
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| T |
3923733 |
atgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggtt |
3923792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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