View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_18 (Length: 425)
Name: NF16661_low_18
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 42 - 409
Target Start/End: Original strand, 3004766 - 3005129
Alignment:
| Q |
42 |
cttgtattttttgtttctgttgtttggttttcttgattttcgaaagtatgtcttttcacatatataattctataataatgcataaaaggaagatcattct |
141 |
Q |
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| T |
3004766 |
cttgtattttttgtttctgttgtttggttttcttgattttcgaaagtatgtcttttcacatatataattctataataatgcataaaaggaagatcattct |
3004865 |
T |
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| Q |
142 |
ttttgaagaagataaaagacatatcattcaattaattattatcttctttctttccactttttctacttctgttggcaatagcgctagttgtatgccattt |
241 |
Q |
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| T |
3004866 |
ttttgaagaagataaaagacatatcattcaattaattattatcttctttctttccactttttctacttctgttggcaatagcgctagttgtatgccattt |
3004965 |
T |
|
| Q |
242 |
tcttcttatactgttgaaaataatctattctaagatttatatggattataatactgatttaagttattttttggacatagaagagttatgtttgcttatg |
341 |
Q |
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| T |
3004966 |
tcttcttatactgttgaaaataatctattctaagatttatatggattataatactgatttaagttattttttggacatagaagagttatgtttgcttata |
3005065 |
T |
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| Q |
342 |
ttaagcaaatacctgctagctgtagagttagacaagcttgcttgctcaacaaaagaaatggaagcatg |
409 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3005066 |
ttaagcaaatacct----gctgtagagttatacaagcttgcttgctcaacaaaagaaatggaagcatg |
3005129 |
T |
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