View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16661_low_21 (Length: 358)
Name: NF16661_low_21
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2950151 - 2949812
Alignment:
| Q |
1 |
tggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950151 |
tggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgt |
2950052 |
T |
|
| Q |
101 |
ttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950051 |
ttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctga |
2949952 |
T |
|
| Q |
201 |
atgggttgaggagaagccaacccttgttgaaatacagaaaatatatggtgctggtaaagattcccttccaaatacaataattgtcttaccactgaagccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2949951 |
atgggttgaggagaagccaacccttgttgacatacagaaaatatatggtgctggtaaagattcccttccaaatacaataattgtcttaccactgaagccg |
2949852 |
T |
|
| Q |
301 |
aacatggtaaggtttgtgaaccaacaactctcaagcatcc |
340 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
2949851 |
gacagggtaaggtttgtgaaccagcaactctcaagcatcc |
2949812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 48 - 297
Target Start/End: Complemental strand, 2924104 - 2923855
Alignment:
| Q |
48 |
ttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatc |
147 |
Q |
| |
|
||||||||| || | | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||| |
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|
| T |
2924104 |
ttgacagaatctttgctatggttgaatttcaggaattggtttcaagagtgtgtttctggttacggctcagccttatgtttttagcaatggatatcagata |
2924005 |
T |
|
| Q |
148 |
aggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgaaatacagaaaatatatg |
247 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |
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|
| T |
2924004 |
aggttcaatgagaagccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgacataaagaagatatatg |
2923905 |
T |
|
| Q |
248 |
gtgctggtaaagattcccttccaaatacaataattgtcttaccactgaag |
297 |
Q |
| |
|
| |||||||||| |||||||| || ||||| |||||||||||| |||||| |
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|
| T |
2923904 |
gcgctggtaaaggttcccttcgaactacaacaattgtcttacctctgaag |
2923855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 2933470 - 2933230
Alignment:
| Q |
47 |
tttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagat |
146 |
Q |
| |
|
||||||| || || ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2933470 |
tttgacataatctttcctatggttgaatttcaggtattggtttcaagagtgtgtttcttgttactgctcagccttatatatttagcaacggatatcagat |
2933371 |
T |
|
| Q |
147 |
caggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgaaatacagaaaatatat |
246 |
Q |
| |
|
||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| || | ||||| |
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|
| T |
2933370 |
aaggttcagtgagaggccctgtacacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaagccttcttgacataaagcagatatac |
2933271 |
T |
|
| Q |
247 |
ggtgctggtaaagattcccttccaaatacaataattgtctt |
287 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2933270 |
ggtgctggtaaagattcccttccaacgacaataattgtctt |
2933230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 69 - 277
Target Start/End: Original strand, 3009325 - 3009533
Alignment:
| Q |
69 |
ttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgt |
168 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||| |
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|
| T |
3009325 |
ttgaattacaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaatggatatcatataaggttcaatgagaggccttgt |
3009424 |
T |
|
| Q |
169 |
ccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgaaatacagaaaatatatggtgctggtaaagattcccttc |
268 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |
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|
| T |
3009425 |
ccacattgcagaattgggtatgtagttcctgaatgggttgaggagaagccaacccttgttgacatacagaagatatatggagctggtaaagattcccttc |
3009524 |
T |
|
| Q |
269 |
caaatacaa |
277 |
Q |
| |
|
||| ||||| |
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|
| T |
3009525 |
caactacaa |
3009533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 65 - 300
Target Start/End: Complemental strand, 37798938 - 37798706
Alignment:
| Q |
65 |
atggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggcc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| |||| ||| |
|
|
| T |
37798938 |
atggttgaatttcaggaattggtttcaagagtgtgtttctggttaccatgcagccgtatatttttagcaatggatatcagataaggttcaatgagaagcc |
37798839 |
T |
|
| Q |
165 |
ttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttgaaatacagaaaatatatggtgctggtaaagattcc |
264 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || ||| || | |||||||||| ||||||||| | |
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|
| T |
37798838 |
ttgtccacattgcagtcttgggtatacagttcctgaatgggttgaggagaagccaaccattgtcgagataaagcagatatatggtgttggtaaaga---c |
37798742 |
T |
|
| Q |
265 |
cttccaaatacaataattgtcttaccactgaagccg |
300 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||| |
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|
| T |
37798741 |
cttccaaatacaaccattgtcttacccctaaagccg |
37798706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 4913374 - 4913705
Alignment:
| Q |
1 |
tggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4913374 |
tggatatccattagagtagccaaattgtagaaaatgatgcaaatcttt-gacagc--ctctccaatggttgaatttcaggaattggtttcaagagtgtgt |
4913470 |
T |
|
| Q |
101 |
ttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctga |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4913471 |
ttctggttactgctcagccttatatttttagcaatggatatcagataagcttcaatgagaatccttgtccacaatgcagtcttgggtatatagttcctga |
4913570 |
T |
|
| Q |
201 |
atgggttgaggagaagccaac---ccttgttgaaatacagaaaatatatggtgctggtaaagattcccttccaaatacaataattgtcttaccactgaag |
297 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||| || | ||||| |||||||||||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
4913571 |
atgggttgaggagaagccaacccgccttcttgacataaagcagatata------tggtaaagattcccttccaactacaacacttgtcttacctctgaag |
4913664 |
T |
|
| Q |
298 |
ccgaacatggtaaggtttgtgaaccaacaactctcaagcat |
338 |
Q |
| |
|
|| ||| | ||| | |||||| || || ||||||||||| |
|
|
| T |
4913665 |
gcggacaagataaattctgtgaaacagcagctctcaagcat |
4913705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 1503587 - 1503865
Alignment:
| Q |
18 |
agccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcag |
117 |
Q |
| |
|
|||||||| | |||||||||| ||||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1503587 |
agccaaattgaagaagatgatgcaaatatgt-gacagaatctcttttatgattgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcaa |
1503685 |
T |
|
| Q |
118 |
ccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagc |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||| ||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||| |
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|
| T |
1503686 |
ccttatatttttagcaatggatatcagataaggttcaatgagaagccatgtccacattgcagtattggctatatagttcctgagtgggttgaggagaagc |
1503785 |
T |
|
| Q |
218 |
caacccttgttgaaatacagaaaatatatggtgctggtaaagattcccttccaaatacaataattgtcttaccactgaagccg |
300 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||||||| ||| |||||||||||| ||||||| | | |||||||| |||||| |
|
|
| T |
1503786 |
caacccttgctgacataaagaatatatatggtgcttgta---attcccttccaactacaatagtcattttaccacttaagccg |
1503865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 47 - 230
Target Start/End: Complemental strand, 28027656 - 28027473
Alignment:
| Q |
47 |
tttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagat |
146 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||| || ||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
28027656 |
tttgacagaatctctcttatggttgaatttcaggaatcggattcaagagtgtgtttctggttagtgctcagccatatatttttagcaatggatatcagat |
28027557 |
T |
|
| Q |
147 |
caggttcaacgagaggccttgtccacattgcagtcttgggtatatagttcctgaatgggttgaggagaagccaacccttgttga |
230 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28027556 |
aaggttcaatgagatgccttgtccacattgcagtcttggatatatagttcctgaatgggttgaggagaagccaacccttgttga |
28027473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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