View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_22 (Length: 356)
Name: NF16661_low_22
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 21840310 - 21839979
Alignment:
| Q |
7 |
atgtcgaagaaaataaaattaggtttaagttcaaacaaaatggtttttacatgatcttgcattgagtctattgcttgaatgagtgtgccaaacatgtctg |
106 |
Q |
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| T |
21840310 |
atgtcaaagaaaataaaattaggtttaagttcaaacaaaatggtttttacatgatcttgcattgagtctattgcttgaatgagtgtgccaaacatgcctg |
21840211 |
T |
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| Q |
107 |
agtgcaaattagaagtgttacttggtaagttatctgagacgtgaaggggaatgatatggattgaagggttgagattgaaagttgatttgatttttggaat |
206 |
Q |
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| T |
21840210 |
agtgcaaattagaagtgttacttggtaagttatctgagacgtgaaggggaatgatatggattgaagggttgagattgaaagttgatttgatttttggaat |
21840111 |
T |
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| Q |
207 |
gttagctgaaggtgacaagaatgagatgtgaattccatgagagaataacttgttggataattgcacaaatggactaatgtgaccgaatgcaaggaaggga |
306 |
Q |
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| T |
21840110 |
gttagctgaaggtgacaagaatgagatgtgaattccatgagagaataacttgttggataattgcacaaatggactaatgtgaccaaatgctaggaaggga |
21840011 |
T |
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| Q |
307 |
aacataactacatgaatctcactgttgattat |
338 |
Q |
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| T |
21840010 |
aacatagctacatgaatctcactgttgattat |
21839979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 311
Target Start/End: Complemental strand, 40440434 - 40440271
Alignment:
| Q |
148 |
tgaaggggaatgatatggattgaagggttgagattgaaagttgatttgatttttggaatgttagctgaaggtgacaagaatgagatgtgaattccatgag |
247 |
Q |
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| T |
40440434 |
tgaagtggaataatttggatggatgggttgagattaagagtggatttgattttgtgaatgttggatgaagctgataagaaagttatgtgaactccttgag |
40440335 |
T |
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| Q |
248 |
agaataacttgttggataattgcacaaatggactaatgtgaccgaatgcaaggaagggaaacat |
311 |
Q |
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| T |
40440334 |
aaaatagcttgttggataattgaacaaaaggacttatatgaccaaatgcaaggaatggaaacat |
40440271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 40443431 - 40443294
Alignment:
| Q |
174 |
gttgagattgaaagttgatttgatttttggaatgttagctgaaggtgacaagaatgagatgtgaattccatgagagaataacttgttggataattgcaca |
273 |
Q |
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| T |
40443431 |
gttgagattaaaagctgttttgattctaggaatgtttgatgaagctgataagaaagttacgcgaactccatgagagaataatttgtttgataattgaaca |
40443332 |
T |
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| Q |
274 |
aatggactaatgtgaccgaatgcaaggaagggaaacat |
311 |
Q |
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| T |
40443331 |
aaaggactaatgtgaccaaatacaaggaatggaaacat |
40443294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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