View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_23 (Length: 356)
Name: NF16661_low_23
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 7418451 - 7418762
Alignment:
| Q |
18 |
ttcttgatgagtgaaactgttgttgctgctgctgattttgttgctgcaacgacgtgagttgttgctgccgttcgcggcgtttagcagctggaacccaagt |
117 |
Q |
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| T |
7418451 |
ttcttgatgagtgaaactgttgttgctgctgctgattttgttgctgcaacgacgtgagttgttgctgccgttcgcggcgtttagcagctggaacccaagt |
7418550 |
T |
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| Q |
118 |
acttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7418551 |
acttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagcttggttaccacaatcttga |
7418650 |
T |
|
| Q |
218 |
cagttcattccaccaccacctaaaccaccacttgaagacctcataactgttaaaccaaatcttgttgattcatcagaaaatgaaacagaaacgttgtcgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7418651 |
cagttcattccaccaccacctaaaccaccacttgaagacctcataactgttaaaccaaatcttgttgattcatcagaaaatgaaacagaaacgttgtcgt |
7418750 |
T |
|
| Q |
318 |
tgttgttgttgt |
329 |
Q |
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|||||||||||| |
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| T |
7418751 |
tgttgttgttgt |
7418762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 52767556 - 52767712
Alignment:
| Q |
77 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
176 |
Q |
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| T |
52767556 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatctta |
52767655 |
T |
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| Q |
177 |
gatgtggacaatctttcttagcttggttaccacaatcttgacagttcattccaccac |
233 |
Q |
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| T |
52767656 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaattcattcctccac |
52767712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 32483108 - 32482966
Alignment:
| Q |
77 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
176 |
Q |
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||||| || ||||| |||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | |
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| T |
32483108 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaacaagttctacatctca |
32483009 |
T |
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| Q |
177 |
gatgtggacaatctttcttagcttggttaccacaatcttgaca |
219 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
32483008 |
tgtgaggacaatctttcttagcttggttaccacaatcttgaca |
32482966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 8102002 - 8101882
Alignment:
| Q |
99 |
tagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaagatgtggacaatctttcttagc |
198 |
Q |
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||||||| |||||||||||||| || |||||||||||||| | ||| |||| |||||| ||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
8102002 |
tagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttcttagc |
8101903 |
T |
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| Q |
199 |
ttggttaccacaatcttgaca |
219 |
Q |
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||| || |||||||||||||| |
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| T |
8101902 |
ttgattcccacaatcttgaca |
8101882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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