View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_24 (Length: 345)
Name: NF16661_low_24
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 87 - 338
Target Start/End: Original strand, 3925639 - 3925890
Alignment:
| Q |
87 |
gtacacaaacatgactaaatattctaacacacctaggatagcgctgcatacatacaagcataaaacaaaattaaaaaagtgtcaatgattaacatgtatt |
186 |
Q |
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| T |
3925639 |
gtacacaaacatgactaaatattctaacacacctaggatagcgctgcatacatacaagcatcaaacaaaattaaaaaagtgtcaatgattaacatgtatt |
3925738 |
T |
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| Q |
187 |
ttcagtacgtttatagattaggatgtgtttagatgaatttttagaaaagcaaaaccgcgatgaatgttgataaacacaaataatatagagatgaatttgg |
286 |
Q |
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| T |
3925739 |
ttcagtacgttcatagattaggatgtgtttagatgaatttttagaaaagcaaaaccgcgatgaatgttgataaacacaaataatatagagatgaatttgg |
3925838 |
T |
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| Q |
287 |
aaaacaaacatacctcttgaagaaaaccaaaaatagagaggcttagaataat |
338 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3925839 |
aaaacatacatacctcttgaagaaaaccaaaaatagagaggcttagaataat |
3925890 |
T |
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