View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_25 (Length: 339)
Name: NF16661_low_25
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 24719732 - 24719423
Alignment:
| Q |
14 |
atgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24719732 |
atgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatg |
24719633 |
T |
|
| Q |
114 |
agatcactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactgcaactaatcgcttaacaatctaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24719632 |
agatcactaacatttaactaaatcttaactatctaataattacctgttacactagtaatcattctctaactaactgcaactaatcgcttaacaatctaat |
24719533 |
T |
|
| Q |
214 |
gatggtgtgataatatataccctttatctctacaagaacactagtgttattagttttctcacatatcatttgtcttagttttccatgctattagtgtatt |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
24719532 |
gatggtgtgataatatataccctttatctctacaagaacactagtgttattagttttctcacatatcattagtcttagttttccatgctattagtttatt |
24719433 |
T |
|
| Q |
314 |
agaataatac |
323 |
Q |
| |
|
||| |||||| |
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|
| T |
24719432 |
agactaatac |
24719423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 24678290 - 24677992
Alignment:
| Q |
14 |
atgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
24678290 |
atgaatgaaaatagatttctcattaatgaattgagatagtacaagttgtatatatacacaagattgtctcgatgttagcttattatgtgtgacaaacatg |
24678191 |
T |
|
| Q |
114 |
agatcactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactgcaactaatcgcttaacaatctaat |
213 |
Q |
| |
|
||||| ||||| |||||||||| |||| ||| | | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24678190 |
agatcgctaac-----------tcttaactatttaatgattccttattacacacgtaatcattctctaactaactgcaactaattgcttaacaatctaat |
24678102 |
T |
|
| Q |
214 |
gatggtgtgataatatataccctttatctctacaagaacactagtgttattagttttctcacatatcatttgtcttagttttccatgctattagtgtatt |
313 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||| |||||||||||| |||| | |||||||||||||||||||||| |
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|
| T |
24678101 |
gatggtgtgataatatataccccttatctgtacaagaacacttgtgtcattagttttttcacatatcattagtctcaattttccatgctattagtgtatt |
24678002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 10876098 - 10876255
Alignment:
| Q |
15 |
tgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatga |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| | |
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|
| T |
10876098 |
tgaataaaaatagatttctcattaatgaattaagcttgaacaagttgtatatatacacaagagtgtctctatgttagcttaccatgtgtaacaaacacaa |
10876197 |
T |
|
| Q |
115 |
gatcactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaac |
183 |
Q |
| |
|
||| ||||| |||||||||| |||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
10876198 |
tatc-----------actaagtcttaactatataatgattacttgttgcacaagtaatcattctctaac |
10876255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 5301903 - 5302069
Alignment:
| Q |
14 |
atgaatgaaaatag---atttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaac |
110 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| ||||| |||||| || | ||| |||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
5301903 |
atgaatgaaaatagcagatttcttattaatgaattgagttagtagaagttgaatgtgtacacaagagtgtctccatgttagcttattatgtgtagcaaac |
5302002 |
T |
|
| Q |
111 |
atgagatcactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaact |
188 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| | ||| |||| ||||| |||||||||||||||||||| |
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|
| T |
5302003 |
acaagatcgctaac-----------tcttaactatctaatgaatacttgttgcacaaataatcattctctaactaact |
5302069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 19242598 - 19242504
Alignment:
| Q |
17 |
aatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaaca |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
19242598 |
aatgaaaatagatttctcattgatgaattgagctagtacaagttttatatatacacaaaagtgtctctatgttagcttattatgtgtaacaaaca |
19242504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 11357246 - 11357428
Alignment:
| Q |
15 |
tgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaacatga |
114 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| || ||||| | |
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|
| T |
11357246 |
tgaatgaaaatagatttttcattattgaatagagctagtacaagttgtatatatacaaaatagtttctctatgttagcttattatgtgtaaccaacataa |
11357345 |
T |
|
| Q |
115 |
gatcacta--------acatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactg |
189 |
Q |
| |
|
||| |||| ||| ||| |||| | |||||||||||| ||||| ||||||||||||||| | |||||||||||| |
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|
| T |
11357346 |
gattactaaattacacacacttagctaacttttaactatctaacgattacttgttacacaagtaatagatttctaactaactg |
11357428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 20528401 - 20528578
Alignment:
| Q |
15 |
tgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacgcaag----------agtgtctctatgttagcttattatgtgtg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||| | |||| |
|
|
| T |
20528401 |
tgaatgaaaatagatttctcattaatgaattgagctagtacaagttgtatatatacataaatatacataaaagcatctttatgttagcttatcacgtgta |
20528500 |
T |
|
| Q |
105 |
acaaacatgagatcactaacatttaactaaatcttaactatctaataattacctgttacacaagtaatcattctctaactaactgcaac |
193 |
Q |
| |
|
|| ||||||||||||||||| |||||| |||||||| ||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
20528501 |
accaacatgagatcactaac-----------tcttaattatctaatgattacttattacacaagtaatcattctctaactaactacaac |
20528578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 16486054 - 16485933
Alignment:
| Q |
15 |
tgaatgaaaatagatttctcattaatgaat----tgagctagtacaagttgtatatatacgcaagagtgtctctatgttagcttattatgtgtgacaaac |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | || ||||| |||||||||||||| || ||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
16486054 |
tgaatgaaaatatatttctcattaatgaatgaatttagttagtagaagttgtatatatat--aaaagtttctctatgttagcttatcatgtgtaacaaac |
16485957 |
T |
|
| Q |
111 |
atgagatcactaacatttaactaa |
134 |
Q |
| |
|
| ||||||||||| |||||||| |
|
|
| T |
16485956 |
acaagatcactaactcttaactaa |
16485933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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