View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_27 (Length: 336)
Name: NF16661_low_27
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 25253850 - 25254160
Alignment:
| Q |
16 |
atcaggtatgatagtttgaacaatagaatcagaagaatggacaagaagataatcaacctaaaagggcgactaaggttttaggtgaaagaacgaagaggta |
115 |
Q |
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| T |
25253850 |
atcaggtatgatagtttgaacaatagaatcagaagaatggacaagaagataatcaacctaaaagggagactaaggttttaggtgaaagaacgaagaggta |
25253949 |
T |
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| Q |
116 |
ataatatcaatttt--gttgt---ttcaagattttattgaaacaaatgccttagactgtaaaaactaaaatcatcagccagaaaatacataaaagaacaa |
210 |
Q |
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| T |
25253950 |
ataatatcaattttctgttgtaatttcaagagtttattgaaacaaatgccttagactgtaaaaactaaaatcatcagccagaaaatacataaaagaacaa |
25254049 |
T |
|
| Q |
211 |
cgaaatagtttcaagttgtggttccaaccaaaagtatttttgcttatgcataggtaaagttaactttatcatagaatgaaattcatagacagcaatgtaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25254050 |
cgaaatagtttcaagttgtggttccaaccaaaagtacttttgcttatgcataggtaaagttaactttatcatagaatgaaattcatagacagcaatgtaa |
25254149 |
T |
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| Q |
311 |
gacataaaaag |
321 |
Q |
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||||||||||| |
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| T |
25254150 |
gacataaaaag |
25254160 |
T |
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