View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_30 (Length: 313)
Name: NF16661_low_30
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_30 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 31045350 - 31045049
Alignment:
| Q |
1 |
attaaatgtatgttgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatgtttgcatga |
100 |
Q |
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| T |
31045350 |
attaaatgtatgttgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggttatatgaacatgtttgcatga |
31045251 |
T |
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| Q |
101 |
gtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaaacttcgtttggtgaggctttaggag |
200 |
Q |
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| T |
31045250 |
gtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgccgcaagcttcgtttggtgaggctttaggag |
31045151 |
T |
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| Q |
201 |
aagagcaacttttcctttacatacactgctgcataccttgcatgtgatgattcatgtcacactgtttatggtctttatctgagctctttgcttatagttc |
300 |
Q |
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| T |
31045150 |
aatagcaacttttcctttacatacactgctgaataccttgcatgagatgattcatgtcagactgtttatggtctttatctgagctctttgcttatagttc |
31045051 |
T |
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| Q |
301 |
at |
302 |
Q |
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| T |
31045050 |
at |
31045049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 172022 - 172338
Alignment:
| Q |
1 |
attaaatgtatgt-tgtgacaattggatacggataaaatatgtactcataattcaatggaattttagagaaagagagggctatatgaacatgtttgcatg |
99 |
Q |
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|||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
172022 |
attaaatgaatgtgtgtgacaattggatacggatgaaatatgtactaataattcaatggaatttcagagaaagagaggattatatgaacatgtttgcatg |
172121 |
T |
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| Q |
100 |
agtttaaattttgaatcttaatttacatatacaaaaagtttttaatgtgaagatgaagacttgttatatgcc------gcaaacttcgtttggtgaggct |
193 |
Q |
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|| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||||||||| |||| |
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| T |
172122 |
agattgaattttgaa-cttaatttacatatacaaaatgtttttaatgtgaagatgaagacctgttatatatcttctaatcaagcttcgtttggtgtggct |
172220 |
T |
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| Q |
194 |
ttaggagaagagcaac-ttttcctt-tacatacactgc---tgcatacc--ttgcatgtgatgattcatgtcacac--tgtttatggtctttatctgagc |
284 |
Q |
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||| |||||||||||| |||||||| || | || | | | || ||| || |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
172221 |
ttaagagaagagcaacattttccttctagaaacgtttcctttacacacccgtttcatgtgatgattcatgtcacactttgtttatggtctttatctgagc |
172320 |
T |
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| Q |
285 |
tctttgcttatagttcat |
302 |
Q |
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| T |
172321 |
tatttgcttataattcat |
172338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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