View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_32 (Length: 304)
Name: NF16661_low_32
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 2298774 - 2298491
Alignment:
| Q |
12 |
gacagtttaaattgattggttgtataatcacgaaattgtgactgaacacacaacccagatccctaaaactcgtagaatatcatagttttgagccaagtga |
111 |
Q |
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| T |
2298774 |
gacagtttaaattgattggttgtataatcacgaaattgtgactgaacacacaacccagatccctaaaactcgtagaataacatagttttgagccaagtga |
2298675 |
T |
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| Q |
112 |
agtataaagactaattgaacatttatagtatttggcatcttggattattgtattgttgctgtattcaataaacaaat-aaatcatttcaaataacgtaaa |
210 |
Q |
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| T |
2298674 |
agtataaagactaattgaacatttatagtatttggcatcttggattattgtattgttgctgtattcaataaacaaataaaatcatttcaaataacgtaaa |
2298575 |
T |
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| Q |
211 |
gtatacgtagagtatatattcttttttaaatagttgagacgtaaaaaattagaaatgtgtgtaaatgtgactgtgcctcctttg |
294 |
Q |
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| T |
2298574 |
gtatacgtagagtatatattcttttttaaatagttgagacgtaaaaaattagaaatgtgtgtaaatgtgactgtgcctcctttg |
2298491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 2322937 - 2322865
Alignment:
| Q |
58 |
cacacaacccagatccctaaaactcgtagaatatcatagttttgagccaagtgaagtataaagactaattgaac |
131 |
Q |
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| T |
2322937 |
cacacaatccaaatctctaaaaatcatagaatatcttagttttgagccaagtaaagtataaa-actaattgaac |
2322865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 2322685 - 2322643
Alignment:
| Q |
167 |
ttgctgtattcaataaacaaa-taaatcatttcaaataacgta |
208 |
Q |
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| T |
2322685 |
ttgctgtattcaataaacaaattaaatcatttcaaatagcgta |
2322643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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