View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_36 (Length: 272)
Name: NF16661_low_36
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 45066646 - 45066762
Alignment:
| Q |
36 |
tgaaggagcaaatggaagatatagaatacattagaagggaggggttttgggattcatttttcttcataagacggtatcctctagttcagggaactaaaat |
135 |
Q |
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| T |
45066646 |
tgaaggagcaaatggaagaaatagaatacattagaagggaggggttttgggattcatttttcttcataagacggtatcctctagttcagggaactacaat |
45066745 |
T |
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| Q |
136 |
attgtattggaggagag |
152 |
Q |
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| T |
45066746 |
attgtattggaggagag |
45066762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 45066869 - 45066968
Alignment:
| Q |
160 |
atcattctctaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctctaaacagcagcaccaattccttccttc |
259 |
Q |
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| T |
45066869 |
atcattctttaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacccctaaacagcagcaccaattccttccttc |
45066968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 3537352 - 3537425
Alignment:
| Q |
160 |
atcattctctaagaaa-tgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctc |
232 |
Q |
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| T |
3537352 |
atcattctctaaaaaactactcttttaaaaaatttgaaagatttcttcattttccctcatattttccacccctc |
3537425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 16625739 - 16625677
Alignment:
| Q |
160 |
atcattctctaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattt |
222 |
Q |
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| T |
16625739 |
atcattctctaaaaaatactctttcaaaaaatgtgaaagatttctccatttccctctatattt |
16625677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 7367744 - 7367792
Alignment:
| Q |
179 |
tctttaacaaaatttgaaagatttcttcattttccgctatattttccac |
227 |
Q |
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| T |
7367744 |
tctttaaaaaaatgtgaaagatttcttcattttccctcatattttccac |
7367792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 34336177 - 34336249
Alignment:
| Q |
161 |
tcattctctaagaaa-tgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctc |
232 |
Q |
| |
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||||||||||| ||| | |||||| |||||||||||||||||||| |||||| | ||||||||||| |||| |
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| T |
34336177 |
tcattctctaaaaaactactcttttacaaaatttgaaagatttctccatttttcctcatattttccacccctc |
34336249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 38568309 - 38568241
Alignment:
| Q |
164 |
ttctctaagaaatgctctttaacaaaatttgaaagatttcttcattttccgctatattttccacacctc |
232 |
Q |
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|||||||| || | |||||| | |||| |||||||||||||||||||||| ||||||||||| |||| |
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| T |
38568309 |
ttctctaaaaactactcttttaaaaaaattgaaagatttcttcattttccctcatattttccacccctc |
38568241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 38795319 - 38795279
Alignment:
| Q |
187 |
aaaatttgaaagatttcttcattttccgctatattttccac |
227 |
Q |
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| T |
38795319 |
aaaatttgaaagatttcttcattttccctcatattttccac |
38795279 |
T |
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