View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_4 (Length: 705)
Name: NF16661_low_4
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 269 - 697
Target Start/End: Complemental strand, 16899231 - 16898792
Alignment:
| Q |
269 |
gatctctttcggtttaatcatatgttctaggttttaaaccaaccctaaagatacaggggtgttaaatttcaaatgagagttttgtccttcattatcttct |
368 |
Q |
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| T |
16899231 |
gatctctttcagtttaatcatatgttctagattttaaaccaaccctaaaaatacaggggtgttaaatttcaaatgagagttttgtccttcattatcttct |
16899132 |
T |
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| Q |
369 |
tactcaactcgaagattagtctttttaactgcgcgcaaatcatatccgtctgaaaaaacaaaataattgaatatggtacgtaacaagattcccttcctat |
468 |
Q |
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| T |
16899131 |
tactcaactcgaagattagtctttgtaattgcgcgcagattatatcagtct-aaaaaacaaaataattgaatatggtacgtaacaagattcccttcctat |
16899033 |
T |
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| Q |
469 |
tgaatgttg------------gttttgctgacttgcaatagataagtatgcagaatctaccttaagatctatctttctttgtttcttctagttctacaac |
556 |
Q |
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| T |
16899032 |
tgaatgttgtcatccattttggttttgctgacttgcaatagataagtatgcagaatctaccttaagatctatctttctttgtttcttctagttctacaac |
16898933 |
T |
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| Q |
557 |
ataaaaataaaacactctttcaacatcaaacaacattaaaataactttgcatgcactttagtttatattatagtacaaaacaatccacttaaccatgttt |
656 |
Q |
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| T |
16898932 |
ataaaaataaaataccttttcaacatcaaacaacattaaaataacattgcatgcactttagtttatattatagtacaaaacaatccacttaaccatgttt |
16898833 |
T |
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| Q |
657 |
ttaactacaactaagtcttatatttcattacctttcatctc |
697 |
Q |
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| T |
16898832 |
ttaactacaactaagtcttatatttcatcacctttcatctc |
16898792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 16899462 - 16899295
Alignment:
| Q |
20 |
gagggaagaagtaaaatcgtagtaaatttcactgttttgtttgtgttttatactgtctaccaaatatcatgacaaaaaattgtcagtaactcaaatgtct |
119 |
Q |
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| T |
16899462 |
gagggaagaagtaaaatcgtagtaaatttcactgttttgtttgtgttttatactgtctaccaaatatcatgacaaaaaattgtctgtaactcaaatgttt |
16899363 |
T |
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| Q |
120 |
gtcttgttcttctgcttacttgcatcaaacggacctttatagatatttaaaggagagagacgtgtagg |
187 |
Q |
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| T |
16899362 |
gtcttgttcttctgcttacttgcatcaaacggacctttatagatatttaaaggagagagacgtgtagg |
16899295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 694
Target Start/End: Complemental strand, 16901734 - 16901671
Alignment:
| Q |
630 |
tacaaaacaatccacttaaccatgtttttaactacaactaagtcttatatttcattacctttcat |
694 |
Q |
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| T |
16901734 |
tacaacacaatcc-cttaatcatgttttcatcaacaactaagtcttatacttcatcacctttcat |
16901671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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