View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_low_41 (Length: 262)

Name: NF16661_low_41
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_low_41
NF16661_low_41
[»] chr4 (12 HSPs)
chr4 (15-222)||(50250605-50250812)
chr4 (150-222)||(50669237-50669309)
chr4 (160-201)||(48852849-48852890)
chr4 (157-201)||(48903120-48903164)
chr4 (150-201)||(48705237-48705288)
chr4 (150-188)||(7773696-7773734)
chr4 (166-220)||(49040984-49041038)
chr4 (150-187)||(7771553-7771590)
chr4 (150-187)||(7790238-7790275)
chr4 (157-190)||(48898893-48898926)
chr4 (157-190)||(49044055-49044088)
chr4 (166-222)||(48863421-48863477)
[»] chr6 (2 HSPs)
chr6 (150-222)||(21979465-21979537)
chr6 (160-202)||(21015992-21016034)
[»] chr8 (3 HSPs)
chr8 (158-195)||(12195484-12195521)
chr8 (158-195)||(12439912-12439949)
chr8 (156-190)||(15349038-15349072)
[»] chr1 (1 HSPs)
chr1 (157-222)||(24367327-24367392)
[»] chr7 (1 HSPs)
chr7 (150-201)||(48883984-48884036)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 50250812 - 50250605
Alignment:
Q  15 ctatcatccttatgattataatgattcatcacatttggagnnnnnnncattgagaaataatatctggaaacaaattgaaattgagggtacacacttagct 114  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250812 ctatcatccttatgattataatgattcatcacatttggagtttttttcattgagaaataatatctggaaacaaattgaaattgagggtacacacttagct 50250713  T
Q  115 tatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgtta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50250712 tatatgaattccactttggatcctcgtagcaagcgaggggttctctttaatggggctattcattggttggcttttcgttatgatttattggtctatgtta 50250613  T
Q  215 ttgttgcc 222  Q
    ||||||||    
T  50250612 ttgttgcc 50250605  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 50669237 - 50669309
Alignment:
Q  150 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 222  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||  ||| | ||| |||||||||    
T  50669237 aggggttctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcc 50669309  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 48852849 - 48852890
Alignment:
Q  160 tttaatggggctattcattggttggcttttccttatgattta 201  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  48852849 tttaatggggctattcattggttggcttttcgtcatgattta 48852890  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 48903120 - 48903164
Alignment:
Q  157 ctctttaatggggctattcattggttggcttttccttatgattta 201  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  48903120 ctctttaatggggctattcattagttggcttttcatcatgattta 48903164  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 48705288 - 48705237
Alignment:
Q  150 aggggttctctttaatggggctattcattggttggcttttccttatgattta 201  Q
    |||||| |||| |||||||||||||||||||||||||| || | ||||||||    
T  48705288 aggggtgctctataatggggctattcattggttggcttatcgtcatgattta 48705237  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 7773734 - 7773696
Alignment:
Q  150 aggggttctctttaatggggctattcattggttggcttt 188  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  7773734 agggtttctatttaatggggctattcattggttggcttt 7773696  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 49041038 - 49040984
Alignment:
Q  166 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttg 220  Q
    ||||||||||||||||||||||||| | ||||| |||  || |||||||||||||    
T  49041038 ggggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttg 49040984  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 7771553 - 7771590
Alignment:
Q  150 aggggttctctttaatggggctattcattggttggctt 187  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771553 agggtttctatttaatggggctattcattggttggctt 7771590  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 7790238 - 7790275
Alignment:
Q  150 aggggttctctttaatggggctattcattggttggctt 187  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7790238 agggtttctatttaatggggctattcattggttggctt 7790275  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 48898893 - 48898926
Alignment:
Q  157 ctctttaatggggctattcattggttggcttttc 190  Q
    |||| |||||||||||||||||||||||||||||    
T  48898893 ctctataatggggctattcattggttggcttttc 48898926  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 49044088 - 49044055
Alignment:
Q  157 ctctttaatggggctattcattggttggcttttc 190  Q
    |||||||||||||||||||| |||||||||||||    
T  49044088 ctctttaatggggctattcactggttggcttttc 49044055  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 48863421 - 48863477
Alignment:
Q  166 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 222  Q
    ||||||||||||||||||||||||| | ||||| ||   || |||||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcc 48863477  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 21979537 - 21979465
Alignment:
Q  150 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 222  Q
    ||||||| |||||||| ||||||||||||||||| ||||||  ||||||||||  || | |||||||||||||    
T  21979537 aggggttttctttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcc 21979465  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 21015992 - 21016034
Alignment:
Q  160 tttaatggggctattcattggttggcttttccttatgatttat 202  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  21015992 tttaatggggctattcattggttggcttttcgtcatgatttat 21016034  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 12195484 - 12195521
Alignment:
Q  158 tctttaatggggctattcattggttggcttttccttat 195  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12195484 tctttaatggggctattcattggttggcttctccttat 12195521  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 12439912 - 12439949
Alignment:
Q  158 tctttaatggggctattcattggttggcttttccttat 195  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12439912 tctttaatggggctattcattggttggcttctccttat 12439949  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 15349038 - 15349072
Alignment:
Q  156 tctctttaatggggctattcattggttggcttttc 190  Q
    ||||| |||||||||||||||||||||||||||||    
T  15349038 tctctataatggggctattcattggttggcttttc 15349072  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 24367327 - 24367392
Alignment:
Q  157 ctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 222  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| ||   ||| ||||||||||||||    
T  24367327 ctctttcatggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcc 24367392  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 48883984 - 48884036
Alignment:
Q  150 aggggttctctttaatggggctattcattggttgg-cttttccttatgattta 201  Q
    |||| ||| ||||||||||||||||||||||||||  ||||| ||||||||||    
T  48883984 agggtttccctttaatggggctattcattggttggttttttcgttatgattta 48884036  T

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