View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_42 (Length: 262)
Name: NF16661_low_42
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 21875268 - 21875478
Alignment:
| Q |
41 |
ggatcccagaaatagcttctgaacttggcataaaatctgtttacttctcggtctactcagccatttcagcttcttacttatgtccaccttcaagacttga |
140 |
Q |
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| T |
21875268 |
ggatcccagaaatagcttctgaacttggcataaaatctgtttacttctcggtctactcagccatttcagcttcttacttatgtccatcttcaagacttga |
21875367 |
T |
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| Q |
141 |
tgatactaaaggaagagacatcacttatgaggactttaaaaatcccccacttgggtattttccaaatgccaagctttcccttcaaaccttccaagccaaa |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21875368 |
tgatactaaaggaagagacatcacttatgaggactttaaaaatcccccacttgggtattttccaaattccaagctttcccttcaaaccttccaagccaaa |
21875467 |
T |
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| Q |
241 |
aatatcttcat |
251 |
Q |
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||||||||||| |
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| T |
21875468 |
aatatcttcat |
21875478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21840282 - 21840321
Alignment:
| Q |
1 |
cttaaacctaattttattttctttgacattgcaacaagtt |
40 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
21840282 |
cttaaacctaattttattttctttgacattgcaacaagtt |
21840321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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