View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_44 (Length: 261)
Name: NF16661_low_44
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 1521432 - 1521183
Alignment:
| Q |
1 |
tatctgtcaaccttgacatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagtccttc |
100 |
Q |
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| T |
1521432 |
tatctgtcaaccttgacatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagtccttc |
1521333 |
T |
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| Q |
101 |
ccattttatcttcaaatcttctaaaataatctcaagtcaaagtagttgcacaattcctataatcttaattaaacatcaactttttctttataaaagaaaa |
200 |
Q |
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| T |
1521332 |
ccattttatcttcaaatcttctaaaataatctcaagtcaaagtagttgcacaattcctataatcttaattaaacatcaactttttctttataaaagaaag |
1521233 |
T |
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| Q |
201 |
tagttgcacaaaatcattttgcgctcattatttaggttctgttcttttca |
250 |
Q |
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| T |
1521232 |
tagttgcacaaaatcattttgcgctcattatttaggttctgttcttttca |
1521183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 2913268 - 2913125
Alignment:
| Q |
1 |
tatctgtcaaccttgacatgctaagttcaatcacgctgaattggattgtgtgctgagctgttttcttatttattttctcattagagcttcatagtccttc |
100 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||||| |
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| T |
2913268 |
tatctgtcaaccttgacatgcttagttcaatcatgctgaattggattgtgtactgagctgttttcttatttattttcccagtagagcttcacagtccttc |
2913169 |
T |
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| Q |
101 |
ccattttatcttcaaatcttctaaaataatctcaagtcaaagta |
144 |
Q |
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| T |
2913168 |
ccattttatcttcaaatcttttaaaataatctcaagtcaaagta |
2913125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 2913091 - 2912992
Alignment:
| Q |
151 |
caattcctataatcttaattaaacatcaactttttctttataaaagaaaatagttgcacaaaatcattttgcgctcattatttaggttctgttcttttca |
250 |
Q |
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|||||| || |||||||||| |||||||| ||| ||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||||||||| |
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| T |
2913091 |
caattcttacaatcttaattcaacatcaattttgtctttataaaagaaagtagtggcatgaaatcattttgcgttctttatttaggttctgttcttttca |
2912992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 12171811 - 12171745
Alignment:
| Q |
82 |
tagagcttcatag-tccttcccattttatcttcaaatcttctaaaataatctcaagtcaaagtagtt |
147 |
Q |
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|||| |||||||| ||| ||| |||||||||||||||||||||||||||| | || |||||||||| |
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| T |
12171811 |
tagaacttcataggtccatccaattttatcttcaaatcttctaaaataatttgcagccaaagtagtt |
12171745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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