View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_47 (Length: 250)
Name: NF16661_low_47
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_47 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 47636570 - 47636333
Alignment:
| Q |
13 |
aatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgtaac |
112 |
Q |
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| T |
47636570 |
aatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgcgcaatccctccaataatcttgtaac |
47636471 |
T |
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| Q |
113 |
gccttgtccaatccaacagcctttgtttttcaggatctgaataaattttctattcataagactatgatccccgataaaagtaaaccagtttaatgaaaca |
212 |
Q |
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| T |
47636470 |
gccttgtccaatccaacagcctttgtttttcaggatctgcataaattttctattcataagactatgatccccgataaaagtaaaccagtttaatgaaaca |
47636371 |
T |
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| Q |
213 |
gaaatttgacaaaagaattcaattgcacagttttctca |
250 |
Q |
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| T |
47636370 |
gaaatttgacaaaagaattcaattgtacagttttctca |
47636333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 47568304 - 47568239
Alignment:
| Q |
44 |
taattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataatcttgt |
109 |
Q |
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| T |
47568304 |
taattttaaggcgtgaatcctcatggagataaagaattcctcgagcaattcctccaataatcttgt |
47568239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 47287649 - 47287585
Alignment:
| Q |
10 |
aataatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagata |
74 |
Q |
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| T |
47287649 |
aataatatattactagctttaagatcgcgatgtatgattctaagtcgagaatcttcgtgaagata |
47287585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36376347 - 36376261
Alignment:
| Q |
18 |
gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat |
104 |
Q |
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| T |
36376347 |
gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat |
36376261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36429392 - 36429306
Alignment:
| Q |
18 |
gttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccctccaataat |
104 |
Q |
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| T |
36429392 |
gttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat |
36429306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 36389568 - 36389512
Alignment:
| Q |
39 |
atgaataattttaagcctagaatcttcatgaagatattgaatgcctcgagcaatccc |
95 |
Q |
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| T |
36389568 |
atgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatccc |
36389512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 28419916 - 28419879
Alignment:
| Q |
55 |
ctagaatcttcatgaagatattgaatgcctcgagcaat |
92 |
Q |
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| T |
28419916 |
ctagaatcttgatgaagatattgaattcctcgagcaat |
28419879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 28433149 - 28433112
Alignment:
| Q |
55 |
ctagaatcttcatgaagatattgaatgcctcgagcaat |
92 |
Q |
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| T |
28433149 |
ctagaatcttgatgaagatattgaattcctcgagcaat |
28433112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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