View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_48 (Length: 250)
Name: NF16661_low_48
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_48 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 1794448 - 1794282
Alignment:
| Q |
87 |
attcatatacattgtagaataaccaaagtaacatttgtctatagaaaaacaactgaagtcatgaaaggtgagcattcttgattcttggttcattaa---a |
183 |
Q |
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| T |
1794448 |
attcacatacattgtagaataaccaaagtaacatttgtctatagaaaaacaactgaagtcatgaaaggtgaccattctttattcttggttcattaatata |
1794349 |
T |
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| Q |
184 |
aagagacaaatggtaatatgcatttaagagttgaataaaaaacattatgaagagacttccacatcat |
250 |
Q |
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| T |
1794348 |
aagagacaaatggtaatatgcatttaagagttgaataaaaaacattatgacgagacttccacatcat |
1794282 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 1794582 - 1794508
Alignment:
| Q |
19 |
cgaatttagaaacattcacaaaatctattatatgtttccatacttttcttgtaaacaacacaatagaaattcata |
93 |
Q |
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| T |
1794582 |
cgaatttagaaacattcaatgaatctattatatgtttccatacttttcttgtaaacaacacaatagaaattcata |
1794508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 2021293 - 2021220
Alignment:
| Q |
171 |
ttggttcattaaaaagagacaaa-tggtaatatgcatttaagagttgaataaaaaacattatgaagagacttcc |
243 |
Q |
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| T |
2021293 |
ttggatcatgaaaaagaaacaaaatggcaatatacatttaagagttgaataaaaaacatcatgaagagacttcc |
2021220 |
T |
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