View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_49 (Length: 244)
Name: NF16661_low_49
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 1521572 - 1521794
Alignment:
| Q |
5 |
cctattcaccaacttcaggggggtatggaaaatctgtgagtttaaggaatgcatatatagagttatagtttagtttgcattattttgtaatctcttataa |
104 |
Q |
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| T |
1521572 |
cctattcaccaacttcaggggggtatggaaaatctgtgagtttaaggaatgcatatatagagttatagtttagtttgcattattttgtaatctcttataa |
1521671 |
T |
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| Q |
105 |
tataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtgtgtgtgtcatttggccgcgcctttggttgacaagtgggtagcttcaattca |
204 |
Q |
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| T |
1521672 |
tataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtgtgtgtgtcatttggccgcgcctttggttgacaagtgggtagcttcaattca |
1521771 |
T |
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| Q |
205 |
tgcctcgtgtccagttgggtttt |
227 |
Q |
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||||||||||||||||||||||| |
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| T |
1521772 |
tgcctcgtgtccagttgggtttt |
1521794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 22081211 - 22081074
Alignment:
| Q |
92 |
taatctcttataatataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtgtgtgtgt--catttggccgcgcctttggttgacaagtg |
189 |
Q |
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| T |
22081211 |
taatctcttataatataagaaaggagtgcacactcaagcacagcttgacttcttgcagcgtgtgtgtgtgacatttggcagtgcctttgcttgacaagtg |
22081112 |
T |
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| Q |
190 |
ggtagcttcaattcatgcctcgtgtccagttgggtttt |
227 |
Q |
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| T |
22081111 |
ggtagcttctttacatgacatgtgtgcagttgggtttt |
22081074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 2913419 - 2913497
Alignment:
| Q |
19 |
tcaggggggtatggaaaatctgtgagtttaaggaatgcatatata--gagttatagtttagtttgcattattttgtaat |
95 |
Q |
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| T |
2913419 |
tcaggggggtatggaaaatctgtgagttttaggaatgcatatatatggagttatagtttagtttacattattttgtaat |
2913497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 32172738 - 32172637
Alignment:
| Q |
93 |
aatctcttataatataagaaaggagtgcacactcaaccacagcttgacctctggcagcgtg--tgtgtgtcatttggccgcgcctttggttgacaagtgg |
190 |
Q |
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| T |
32172738 |
aatctcttataatataagaaaggagtgcacgctcaacaggagcttgacatctggcagcgtgtatgtgtgccatttggcagcggctttgcttgacaagtgg |
32172639 |
T |
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| Q |
191 |
gt |
192 |
Q |
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|| |
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| T |
32172638 |
gt |
32172637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 23701493 - 23701465
Alignment:
| Q |
100 |
tataatataagaaaggagtgcacactcaa |
128 |
Q |
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| T |
23701493 |
tataatataagaaaggagtgcacactcaa |
23701465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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