View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_low_5 (Length: 626)

Name: NF16661_low_5
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_low_5
NF16661_low_5
[»] chr6 (3 HSPs)
chr6 (38-219)||(6500007-6500188)
chr6 (426-593)||(6500474-6500641)
chr6 (226-395)||(6500287-6500456)
[»] chr4 (10 HSPs)
chr4 (274-385)||(7636900-7637011)
chr4 (274-391)||(7628524-7628641)
chr4 (274-386)||(7606072-7606184)
chr4 (274-382)||(7615086-7615194)
chr4 (290-382)||(7656312-7656404)
chr4 (430-492)||(7615229-7615291)
chr4 (448-491)||(7637061-7637104)
chr4 (430-480)||(7656227-7656277)
chr4 (442-491)||(7606227-7606276)
chr4 (445-481)||(39082357-39082393)
[»] chr3 (4 HSPs)
chr3 (426-509)||(40147426-40147509)
chr3 (282-386)||(40147536-40147640)
chr3 (293-386)||(8102310-8102403)
chr3 (426-497)||(8102430-8102501)
[»] chr7 (5 HSPs)
chr7 (274-385)||(8936264-8936375)
chr7 (274-385)||(8913761-8913872)
chr7 (289-386)||(8941907-8942004)
chr7 (448-492)||(8936170-8936214)
chr7 (442-491)||(8941816-8941865)
[»] scaffold0190 (1 HSPs)
scaffold0190 (437-482)||(4448-4493)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 6500007 - 6500188
Alignment:
Q  38 ttcttaattagattaatattcactccttatccagctatgaacctacatctccaacattttatcttaagctcaaatcagttgagctatcaaactccgtaga 137  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6500007 ttctcaattagattaatattcactccttatccagctatgaacctacatctccaacattttatcttaagctcaaatcagttgagctatcaaacttcgtaga 6500106  T
Q  138 ccgtaactgaatgcataatacatgtcaccacatgcctcaacttgatacaatacatatcaacacagacggaaaatcaaacctt 219  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500107 ctgtaactgaatgcatgatacatgtcaccacatgcctcaacttgatacaatacatatcaacacagacggaaaatcaaacctt 6500188  T

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Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 426 - 593
Target Start/End: Original strand, 6500474 - 6500641
Alignment:
Q  426 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttactggcaaatgtattactattgattgtgcta 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  6500474 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttaccggcaaatgtattactattgatcgtgcta 6500573  T
Q  526 gagattctaatgctcggatttctcaaccaagattcgtagttattcttcaatttctcatcagactgcaa 593  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6500574 gagattctaatgctcggatttctcaaccaagattcgtatttattcttcaatttctcatcagactgcaa 6500641  T

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Target: chr6; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 226 - 395
Target Start/End: Original strand, 6500287 - 6500456
Alignment:
Q  226 aaactaaaacggcatcattttgtaaaccttaaatctacatacattattattagttggacacagcatccatgaaattagggtcattactcattgcttccaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6500287 aaactaaaacggcatcattttgtaaaccttaaatctacatacattattattagttggacacagcatccatgaaattagggtcataactcattgcttccaa 6500386  T
Q  326 agtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaatacactaaccata 395  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  6500387 agtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccata 6500456  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 274 - 385
Target Start/End: Original strand, 7636900 - 7637011
Alignment:
Q  274 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 373  Q
    |||||||||||||| ||||||||||||| |||||||| | |||| | |||||| |||    ||||| |||||||||||||||||||||||| |||||| |    
T  7636900 attagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctat 7636999  T
Q  374 tccagcaaatac 385  Q
    ||| ||||||||    
T  7637000 tccggcaaatac 7637011  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 274 - 391
Target Start/End: Original strand, 7628524 - 7628641
Alignment:
Q  274 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 373  Q
    |||||||||||||| ||||||  || | ||||||||| | |||||| |||||| ||| |||||||| ||| | ||||||||| |||||||| |||||| |    
T  7628524 attagttggacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctat 7628623  T
Q  374 tccagcaaatacactaac 391  Q
    ||||||||||||| ||||    
T  7628624 tccagcaaatacattaac 7628641  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 7606072 - 7606184
Alignment:
Q  274 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 373  Q
    ||||||||| |||  ||||||||||||  |||||| | | |||||| ||||||  ||||||||||| ||| ||||||||||| |||||||| |||||| |    
T  7606072 attagttggtcacgacatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctat 7606171  T
Q  374 tccagcaaataca 386  Q
    |||||||||||||    
T  7606172 tccagcaaataca 7606184  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 7615086 - 7615194
Alignment:
Q  274 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 373  Q
    ||||||||||| || |||||||||| | ||||||||| | |||||| |||||| |||  |  | || |||||||||||| ||||||||||| |||||| |    
T  7615086 attagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctat 7615185  T
Q  374 tccagcaaa 382  Q
    |||||||||    
T  7615186 tccagcaaa 7615194  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 7656404 - 7656312
Alignment:
Q  290 atccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaa 382  Q
    ||||||||| | ||| ||||| | |||||| |||||| |||||||||||| ||| ||||||||||| || ||| | |||||| ||||||||||    
T  7656404 atccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaa 7656312  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 492
Target Start/End: Original strand, 7615229 - 7615291
Alignment:
Q  430 cgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactg 492  Q
    |||| |||||| || || ||||| ||||||||||||||||||| |||||||||||| ||||||    
T  7615229 cgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactg 7615291  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 491
Target Start/End: Original strand, 7637061 - 7637104
Alignment:
Q  448 ccccatccaaaatcattaccataaatatcaaaccacggggaact 491  Q
    ||||||||||||||||||||||||| ||||||||| || |||||    
T  7637061 ccccatccaaaatcattaccataaacatcaaaccatggagaact 7637104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 7656277 - 7656227
Alignment:
Q  430 cgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaac 480  Q
    |||| |||||| || || ||||||||||||||||||||||||| |||||||    
T  7656277 cgaactgccacaggctttccccatccaaaatcattaccataaacatcaaac 7656227  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 7606227 - 7606276
Alignment:
Q  442 ggtttcccccatccaaaatcattaccataaatatcaaaccacggggaact 491  Q
    ||||| |||||||| |||||||||||||||| ||||||||| || |||||    
T  7606227 ggttttccccatccgaaatcattaccataaacatcaaaccatggagaact 7606276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 481
Target Start/End: Original strand, 39082357 - 39082393
Alignment:
Q  445 ttcccccatccaaaatcattaccataaatatcaaacc 481  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  39082357 ttcccccaaccaaaatcattaccataaacatcaaacc 39082393  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 509
Target Start/End: Complemental strand, 40147509 - 40147426
Alignment:
Q  426 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttactggcaaatgtatt 509  Q
    |||||||| |||||| ||||  ||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||    
T  40147509 actgcgaactgccacaggttctccccatccaaaatcattaccataaacatcaaaccacggggaattgctactggctaatgtatt 40147426  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 40147640 - 40147536
Alignment:
Q  282 gacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaa 381  Q
    |||||| |||||||||| | | ||||||| | |||||| |||||| |||||| ||||| ||| ||||||| ||| || ||||| ||||||||||||||||    
T  40147640 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 40147541  T
Q  382 ataca 386  Q
    |||||    
T  40147540 ataca 40147536  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 386
Target Start/End: Original strand, 8102310 - 8102403
Alignment:
Q  293 catgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaataca 386  Q
    |||||||  ||| ||||| | |||||| |||||| |||||| ||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  8102310 catgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca 8102403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 497
Target Start/End: Original strand, 8102430 - 8102501
Alignment:
Q  426 actgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaactgttact 497  Q
    |||||||| |||||| ||||| ||||||||||||| ||| ||||||| |||||||||| |||||||| ||||    
T  8102430 actgcgaactgccactggttttccccatccaaaattattgccataaacatcaaaccactgggaactgctact 8102501  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 8936375 - 8936264
Alignment:
Q  274 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 373  Q
    ||||||||||| || |||||||||| | ||||||||| | |||||| |||||| |||  || |||| ||||||||||||||| |||||||| |||||| |    
T  8936375 attagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctat 8936276  T
Q  374 tccagcaaatac 385  Q
    ||| ||||||||    
T  8936275 tccggcaaatac 8936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 385
Target Start/End: Complemental strand, 8913872 - 8913761
Alignment:
Q  274 attagttggacacagcatccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttt 373  Q
    |||||||||||||| ||||||||||||| |||||||| | |||| | |||||| |||    ||||| ||||||||||||||||||| |||| |||||| |    
T  8913872 attagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctat 8913773  T
Q  374 tccagcaaatac 385  Q
    |||  |||||||    
T  8913772 tccgacaaatac 8913761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 386
Target Start/End: Complemental strand, 8942004 - 8941907
Alignment:
Q  289 catccatgaaattagggtcattactcattgcttccaaagtcttgtaaggaatacaaacttgaaggtctatactaccgtcttcttttccagcaaataca 386  Q
    |||||||||||   |||||| | | |||||| ||||||  || |||||||| ||| ||||||||||| |||||||| |||||| ||||||||||||||    
T  8942004 catccatgaaacgtgggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaataca 8941907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 8936214 - 8936170
Alignment:
Q  448 ccccatccaaaatcattaccataaatatcaaaccacggggaactg 492  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    
T  8936214 ccccatccaaaatcattaccataaacatcaaaccacggagaactg 8936170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 8941865 - 8941816
Alignment:
Q  442 ggtttcccccatccaaaatcattaccataaatatcaaaccacggggaact 491  Q
    ||||| |||||||| |||||||||||||||| ||||||||| || |||||    
T  8941865 ggttttccccatccgaaatcattaccataaacatcaaaccatggagaact 8941816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 4448 - 4493
Alignment:
Q  437 ccacgggtttcccccatccaaaatcattaccataaatatcaaacca 482  Q
    |||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  4448 ccacaggttttccccaaccaaaatcattaccataaacatcaaacca 4493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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