View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_51 (Length: 243)
Name: NF16661_low_51
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 55 - 198
Target Start/End: Original strand, 54153175 - 54153318
Alignment:
| Q |
55 |
tattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttccaagcactgat |
154 |
Q |
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| T |
54153175 |
tattttactcaggattcagaacttctctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttccaagcattgat |
54153274 |
T |
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| Q |
155 |
aaaacctaggtagaacatttgtatgatactcgccctgatctcaa |
198 |
Q |
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| T |
54153275 |
aaaacctaagtagaacatttgtatgatactcgccctgatctcaa |
54153318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 54127833 - 54127985
Alignment:
| Q |
23 |
attaacggctttgaatttagttgtgcatt-atgtattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaac |
121 |
Q |
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| T |
54127833 |
attaacagctttgaatatagttgtgaatgcatgtagtttactcctgttttagaactgttttataggtagtttggtgtcattttatgccatttgatagaac |
54127932 |
T |
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| Q |
122 |
tgttttatcttccattagcttccaagcactgataaaacctaggtagaacattt |
174 |
Q |
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| T |
54127933 |
tgctttgtcttcaatcagcttccaagcattgataaaacctaagtagaacattt |
54127985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 54140955 - 54141078
Alignment:
| Q |
23 |
attaacggctttgaatttagttgtgcatt-atgtattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaac |
121 |
Q |
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| T |
54140955 |
attaacagctctgaatttagttgtgcattcatgtatttcactcatgttttcgaactgttttttaggtagtttggtgtcatgttatgccatttaatagaat |
54141054 |
T |
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| Q |
122 |
tgttttatcttccattagcttcca |
145 |
Q |
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| T |
54141055 |
tgctttgccttccattagcttcca |
54141078 |
T |
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