View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_low_53 (Length: 240)

Name: NF16661_low_53
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_low_53
NF16661_low_53
[»] chr2 (5 HSPs)
chr2 (1-240)||(20935998-20936237)
chr2 (21-240)||(20954239-20954458)
chr2 (43-149)||(39275231-39275337)
chr2 (121-149)||(20924479-20924507)
chr2 (18-62)||(20924566-20924610)
[»] chr1 (10 HSPs)
chr1 (121-240)||(1793993-1794112)
chr1 (1-64)||(1794134-1794197)
chr1 (11-240)||(3373976-3374204)
chr1 (11-149)||(3363966-3364104)
chr1 (20-148)||(3366361-3366489)
chr1 (19-86)||(3342695-3342762)
chr1 (11-146)||(3380195-3380330)
chr1 (11-102)||(6599665-6599756)
chr1 (11-157)||(2020972-2021118)
chr1 (22-167)||(4333593-4333738)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20936237 - 20935998
Alignment:
Q  1 cagtcatatgttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcac 100  Q
    ||||||| | |||||| ||||||||||||||||||| |||  ||||||||||||||||  || | |||||| ||||||||||||||  |||| |||||||    
T  20936237 cagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatcgtcacatgtcgcac 20936138  T
Q  101 tccgatgggtgtggctggtcccgaaaagatatcttcccaacaataggagtcaggtgccaaagggacactttgctcctcaatgcatgcctatatacaatcg 200  Q
    ||  |||||  |||||||  |||||||||| | ||||||||||||||   |||||| |||||||||| | ||| |||||||   |  ||| || |||| |    
T  20936137 tcgaatgggcatggctggcgccgaaaagattttttcccaacaataggcagcaggtgtcaaagggacagtgtgcacctcaatctctttctacatgcaattg 20936038  T
Q  201 ttacaaattcatgtatcaaaggcggaaagatagtatgcat 240  Q
    |||||||| |||| |||||||  |||||||||||||||||    
T  20936037 ttacaaatccatggatcaaagcgggaaagatagtatgcat 20935998  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 20954458 - 20954239
Alignment:
Q  21 ggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggtgtggctggtc 120  Q
    |||||||||||||||| |||  ||||||||||||||||  |  |  ||||| |||||||||| |||  |||| ||||||||   |||||  ||||||||     
T  20954458 ggagaatatagaagtagaaatttgataaaatctaattccaaattggtaccaaagatgccatcaatcgccacatgtcgcacttgaatgggcatggctggtg 20954359  T
Q  121 ccgaaaagatatcttcccaacaataggagtcaggtgccaaagggacactttgctcctcaatgcatgcctatatacaatcgttacaaattcatgtatcaaa 220  Q
    ||||||| ||||||||||||||||||| | ||||||  ||||||  |    || ||||| | |||| ||| || |||| ||||||| | |||| ||||||    
T  20954358 ccgaaaatatatcttcccaacaataggcggcaggtgtgaaaggggaagcacgcgcctcattccatgactacatgcaattgttacaagtccatggatcaaa 20954259  T
Q  221 ggcggaaagatagtatgcat 240  Q
    |  |||||||||||||||||    
T  20954258 gagggaaagatagtatgcat 20954239  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 39275337 - 39275231
Alignment:
Q  43 tgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggtgtggctggtcccgaaaagatatcttcccaaca 142  Q
    |||||||||||||||||||| |  | |||  ||||||| |||| | |||| |||| |||  ||||||  ||||||| || |||||| |||||||||||||    
T  39275337 tgataaaatctaattcagatttgatgccagcgatgccacctatgcccacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaaca 39275238  T
Q  143 ataggag 149  Q
    |||||||    
T  39275237 ataggag 39275231  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 20924507 - 20924479
Alignment:
Q  121 ccgaaaagatatcttcccaacaataggag 149  Q
    |||||||||||||||||||||||||||||    
T  20924507 ccgaaaagatatcttcccaacaataggag 20924479  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 20924610 - 20924566
Alignment:
Q  18 acaggagaatatagaagtaaaaacctgataaaatctaattcagat 62  Q
    ||||| ||||| ||||||| ||| |||||||||||||||||||||    
T  20924610 acaggtgaatagagaagtagaaatctgataaaatctaattcagat 20924566  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 1794112 - 1793993
Alignment:
Q  121 ccgaaaagatatcttcccaacaataggagtcaggtgccaaagggacactttgctcctcaatgcatgcctatatacaatcgttacaaattcatgtatcaaa 220  Q
    |||||||||||||||||||||||||||| ||   ||  ||||||||| ||| ||||||||  | |||||| || |||| |||||||||||||| ||||||    
T  1794112 ccgaaaagatatcttcccaacaataggaatcgcttgttaaagggacaatttcctcctcaagccgtgcctacatgcaattgttacaaattcatggatcaaa 1794013  T
Q  221 ggcggaaagatagtatgcat 240  Q
    || |||||||||||||||||    
T  1794012 ggaggaaagatagtatgcat 1793993  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1794197 - 1794134
Alignment:
Q  1 cagtcatatgttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatat 64  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  1794197 cagtcatatgttctaggacaggagaatatagaagtagaaatctgataaaatctaattcagatat 1794134  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 3374204 - 3373976
Alignment:
Q  11 ttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggt 110  Q
    |||||| |||||||||||| |||||| |||||  |||||||||||||| ||| |  ||||| |||||||||||||   |||| || | |||   |||||     
T  3374204 ttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgccatctattgtcacatgttgtacttgaatgggc 3374105  T
Q  111 gtggctggtcccgaaaagatatcttcccaacaataggagtcaggtgccaaagggacactttgctcctcaatgcatgcctatatacaatcgttacaaattc 210  Q
     ||||||| || ||||||||||||||||||||||||||    || |  ||| ||||| | | ||||||||| | |||||| || |||| || ||||||||    
T  3374104 atggctggccctgaaaagatatcttcccaacaataggatgtgggcgttaaaaggacagtctcctcctcaatccgtgcctacatgcaattgtaacaaattc 3374005  T
Q  211 atgtatcaaaggcggaaagatagtatgcat 240  Q
    ||| |||||||| |||||| ||| ||||||    
T  3374004 atggatcaaagg-ggaaaggtagcatgcat 3373976  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 3364104 - 3363966
Alignment:
Q  11 ttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggt 110  Q
    |||||| ||||||||||||| ||| | ||| ||||||||||||||||||||| |    ||| |||||||||  |||| |||| |||||||| | |||||     
T  3364104 ttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagatttaaagccagagatgccatgcatcctcacatgtcgcacttcaatgggc 3364005  T
Q  111 gtggctggtcccgaaaagatatcttcccaacaataggag 149  Q
     | | |||  ||||||| |||| ||||||||||||||||    
T  3364004 attgttggctccgaaaatatattttcccaacaataggag 3363966  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 3366489 - 3366361
Alignment:
Q  20 aggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggtgtggctggt 119  Q
    |||||||||  |||||| |||||  |||||||||| ||| ||| |  ||||| |||||||||||||   |||| |||||||||  |||||  |||||||     
T  3366489 aggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtcgcactcgaatgggcatggctggc 3366390  T
Q  120 cccgaaaagatatcttcccaacaatagga 148  Q
    || ||||||||||||| | ||||||||||    
T  3366389 cctgaaaagatatcttacgaacaatagga 3366361  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 3342762 - 3342695
Alignment:
Q  19 caggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatc 86  Q
    |||||||||||||||||| |||   ||||||||||||||||||| |  ||||| ||||||||||||||    
T  3342762 caggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgccatctatc 3342695  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 3380330 - 3380195
Alignment:
Q  11 ttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggt 110  Q
    |||||| | ||||||||| ||||||| |||||  |||||||||||||| ||| |  ||||| ||||| |||||||   |||| |||||||||  |||||     
T  3380330 ttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatgtcatctattgtcacatgtcgcactcgaatggga 3380231  T
Q  111 gtggctggtcccgaaaagatatcttcccaacaatag 146  Q
     || |||| |  ||||||||| ||||||||||||||    
T  3380230 ttgactggccttgaaaagataacttcccaacaatag 3380195  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 6599665 - 6599756
Alignment:
Q  11 ttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactc 102  Q
    |||||| ||||||||||||||||||| ||| ||||| || ||||| |||| | |  ||||| ||||||||||||| | |||| |||||||||    
T  6599665 ttctagcacaggagaatatagaagtataaagctgatgaagtctaactcaggtttgataccagagatgccatctattctcacatgtcgcactc 6599756  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 2021118 - 2020972
Alignment:
Q  11 ttctaggacaggagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggt 110  Q
    |||||| | ||| ||||| ||||||| ||| || | |||||||||||||| | |  ||||| ||||||| || || |||||| ||| ||||  |||||||    
T  2021118 ttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctttcataccagagatgccttcaatacacacatgtcacacttggatgggt 2021019  T
Q  111 gtggctggtcccgaaaagatatcttcccaacaataggagtcaggtgc 157  Q
     ||| |||  || |||||| || |||||||||||||||| |||||||    
T  2021018 atggatggctccaaaaagacattttcccaacaataggaggcaggtgc 2020972  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 4333593 - 4333738
Alignment:
Q  22 gagaatatagaagtaaaaacctgataaaatctaattcagatattttaccacagatgccatctatccacacaagtcgcactccgatgggtgtggctggtcc 121  Q
    ||||||||||||||| ||| ||||| |||| |||||||||     ||||| ||||||||||||||  |||| ||||||||| ||  ||  || |  | |     
T  4333593 gagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgtcacatgtcgcactcggaatggcatgaccagcct 4333692  T
Q  122 cgaaaagatatcttcccaacaataggagtcaggtgccaaagggaca 167  Q
     ||| ||||||||||||||||||||| | |||||| ||||||||||    
T  4333693 tgaagagatatcttcccaacaataggtggcaggtgtcaaagggaca 4333738  T

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