View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_54 (Length: 239)
Name: NF16661_low_54
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13359606 - 13359834
Alignment:
| Q |
1 |
caacttaatatcatccataagcattccaaatcaatggaaaattctcacagctcctaattccactaatcatgttcacaaatctaaagatccataatacaaa |
100 |
Q |
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| T |
13359606 |
caacttaatatcatccataagcattccaaatcaatggaaaattctcacagctcctaattccactaatcatgttcacaaatctaaagatccataatacaaa |
13359705 |
T |
|
| Q |
101 |
tttaagctgaaatcaaacttatagtattatataattagtaatcctaatgagtaa----aatacaatgttgattcttcaaaattcaaaaattcaaacaaag |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13359706 |
tttaagctgaaatcaaacttatagtattatataattagtaatcctaatgagtaaaattaatacaatgttgattcttcaaaattcaaaaattcaaacaaag |
13359805 |
T |
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| Q |
197 |
ggaacaaattatgcttatacacgatcatt |
225 |
Q |
| |
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|||| |||||||||||||||||||||||| |
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| T |
13359806 |
ggaataaattatgcttatacacgatcatt |
13359834 |
T |
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