View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_55 (Length: 239)
Name: NF16661_low_55
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_55 |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: scaffold0205 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 18848 - 18635
Alignment:
| Q |
1 |
ttaaagtatttgcatgacaagaacattattcatggaaatataaaaccaaacaatattcttcttacacatgacttcaaaccaatggtacataaccttgac- |
99 |
Q |
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| T |
18848 |
ttaaagtatttgcatgacaagaacattattcatggaaatataaaaccaaacaatattcttcttacacatgacttcaaaccaatggtacataaccttgaca |
18749 |
T |
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| Q |
100 |
--aactatgttgaatatacattttcaatatgaatatatacatttt-tcattttatggaactaactcttattgtaaatgataaaaatgtttttagcttgga |
196 |
Q |
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| T |
18748 |
ataattgtgttgaatatacattttcaatatgaatatatacattttctcattttatggaactaactcttattgtaaatgataaacatgtttttagcttgga |
18649 |
T |
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| Q |
197 |
gattttgacattgg |
210 |
Q |
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||||||||| |||| |
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| T |
18648 |
gattttgaccttgg |
18635 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 2925868 - 2925835
Alignment:
| Q |
38 |
atataaaaccaaacaatattcttcttacacatga |
71 |
Q |
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| T |
2925868 |
atataaaaccaaacaacattcttcttacacatga |
2925835 |
T |
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