View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_63 (Length: 223)
Name: NF16661_low_63
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 37793402 - 37793606
Alignment:
| Q |
1 |
caagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatg |
100 |
Q |
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| T |
37793402 |
caagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatg |
37793501 |
T |
|
| Q |
101 |
gaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtag |
200 |
Q |
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| T |
37793502 |
gaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtag |
37793601 |
T |
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| Q |
201 |
aattt |
205 |
Q |
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||||| |
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| T |
37793602 |
aattt |
37793606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 37792934 - 37793066
Alignment:
| Q |
1 |
caagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatg |
100 |
Q |
| |
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||||||| ||||||||||||||||| |||| || |||||||||| | |||||| ||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
37792934 |
caagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaaca |
37793033 |
T |
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| Q |
101 |
gaaaatgttacttccacaatatcacatgaaaat |
133 |
Q |
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|||||| | ||||||| ||||||||||||||| |
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| T |
37793034 |
gaaaatttcgcttccactatatcacatgaaaat |
37793066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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