View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_7 (Length: 543)
Name: NF16661_low_7
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Original strand, 955381 - 955892
Alignment:
| Q |
17 |
atcaaggccaagacttctcatgaacgaccctaacaacagaaatattgaccctccaccttctactaatcagttaatgggtagcttagctttcatccttgat |
116 |
Q |
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| T |
955381 |
atcaaggccaagacttctcatgaacgaccctaacaacagaaatattgaccctcctccttctactaatcagttaatgggtagcttagctttcatccttgat |
955480 |
T |
|
| Q |
117 |
ccgtctcttagaagacaagaccaaaacaacacaacaccacaatggggaacagaacatgaagatgaccaaaatcaaaatccacaagcatggattacactaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
955481 |
ccgtctcttagaagacaagaccaaaacaacacaacaccacaatggggaacagaacatgaagatgatcaaaatcaaaatccacaagcatggattacactaa |
955580 |
T |
|
| Q |
217 |
gatttgtacgaccaactcgtccaacaaggcctattgnnnnnnnnnnnnnnnnnnaaaacatggctcctcaactcaatgacattgaaaccccgtcattaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
955581 |
gatttgtacgaccaactcgtccaacaaggcctattgcaccaccaccaccac---aaaacatggctcctcaactcaatgacattgaaaccccgtcattaga |
955677 |
T |
|
| Q |
317 |
cgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggttaaggtaacagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
955678 |
cgagttctttgatggtgtgattcacaacaacattagaccggggccgcctccagcgtcaccttcggccattgaagccttgccaatggttaaggtaacagaa |
955777 |
T |
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| Q |
417 |
acacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtggaagtgagagagttaccatgcaaacatttctaccattctg |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
955778 |
acacatttagcaagtgatccgaattgtccaatatgcaaagatgagtttgaggttgatgtgcaagtgagagagttaccatgcaaacatttctaccattctg |
955877 |
T |
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| Q |
517 |
actgcattctccctt |
531 |
Q |
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||||||||||||||| |
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| T |
955878 |
actgcattctccctt |
955892 |
T |
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