View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_low_8 (Length: 536)
Name: NF16661_low_8
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_low_8 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 7688 - 7176
Alignment:
| Q |
18 |
agttgatcagtgtgttgtgtaatccagatattcaatctgcttaagagaacatcttagtctttgattttaatctttgaatgcttgattcattttgtgtgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7688 |
agttgatcagtgtgttgtgtaatccagatattcaatttgcttaagagaacatcttagtctttgattttgatctttgaatgcttgattcattttgtgtgtt |
7589 |
T |
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| Q |
118 |
gttagcaagactttagagattagaagtgttgaaattgctttgactaatttgctatattcgtagagttgtggtgatactttaccttataaatgatttttta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||| |
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| T |
7588 |
gttagcaagactttagagattagaagtgttgaaattgctttgactaaattgctatatgcatagagttgtggtgatactttaccttataaatgat-tttta |
7490 |
T |
|
| Q |
218 |
taggattagcctatcaatttcctttgttgatgttcttgttattataatttgnnnnnnnngtctgtcactaaaactgttttactgtattttgttttctggt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7489 |
taggattagcctatcaatttcctttgttgatgttcttgttattataatttgtttttttagtctgtcactaaaactgttttactgtattttgttttctggt |
7390 |
T |
|
| Q |
318 |
gtctatcactgaatgtattccctgtttttgttgtttctgttttatgcaa---tgttgcttttgcggcgaaatttgttgcccttgctagataattgttgtt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
7389 |
gtctatcactgaatgtattccctgtttttgttgtttctgttttatgtaaaattgttgcttttgcggcgaaatttgttgcccttggtggataattgttgtt |
7290 |
T |
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| Q |
415 |
gttgctcttcctatttatcgttttaaaatgtgtcgaattttctagtttgttatctatgtcaaagtatctatta-ttttatgctaaagtttttagattgaa |
513 |
Q |
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| T |
7289 |
gttgctcttcctatttatcgttttaaaatgtgtcgaattttctagtttgttatctatgtcaaagtatctattatttttatgctgaag-ttttagattgaa |
7191 |
T |
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| Q |
514 |
ttttggaagaattat |
528 |
Q |
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| T |
7190 |
ttttggaagaattat |
7176 |
T |
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Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 42863399 - 42863497
Alignment:
| Q |
68 |
atcttagtctttgattttaatctttgaatgcttgattcattttgtgtgttgttagcaagactttagagattagaagtgttgaaattgctttgactaatt |
166 |
Q |
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| T |
42863399 |
atctttgtctttgattttgatctttgaatgcttgattcattttgtgtgttgttagcaaaactttagagattaaaagtgttgaaattgctttgactaatt |
42863497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1202772 - 1202697
Alignment:
| Q |
18 |
agttgatcagtgtgttgtgtaatccagatattcaatctgcttaagagaac------atcttagtctttgattttaa |
87 |
Q |
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| T |
1202772 |
agttgatcagtgtgttgtgtgatccagatattcaatttgcttaagagaacacaattatcttagtctttgattttaa |
1202697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 19813851 - 19813776
Alignment:
| Q |
18 |
agttgatcagtgtgttgtgtaatccagatattcaatctgcttaagagaac------atcttagtctttgattttaa |
87 |
Q |
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| T |
19813851 |
agttgatcagtgtgttgtatgatccagatattcaatttgcttaagagaacacaattatcttagtctttgattttaa |
19813776 |
T |
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