View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_high_1 (Length: 872)
Name: NF16662_high_1
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 283 - 708
Target Start/End: Original strand, 8355782 - 8356207
Alignment:
| Q |
283 |
aaaacaacttttttgaatttgaaagtaactaatagggtgacggaaagnnnnnnntcccatgtaggcaggcaagcgggaaatgctgatgtggagaagtgat |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355782 |
aaaacaacttttttgaatttgaaagtaactaatagggtgacggaacgaaaaaaatcccatgtaggcaggcaagcgggaaatgctgatgtggagaagtgat |
8355881 |
T |
|
| Q |
383 |
ctatttaagtttagttgatctaccatcttataaattctataaaaataatataatccatttatcaaaagttgcacagaaaatcagaagacaatttagttct |
482 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355882 |
ctatttcagtttagttgatctaccatcttataaattctacaaaaataatataatccatttatcaaaagttgcacagaaaatcagaagacaatttagttct |
8355981 |
T |
|
| Q |
483 |
ggttgatgctaaactaattcagcaatgataattaaaatgaggcaagaataatatatttttctttacacattaacaatacacaaagtgcattcagatgttc |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355982 |
ggttgatgctaaactaattcagcaatgataattaaaatgaggcaagaataatatatttttctttacacattaacaatacacaaagtgcattcagatgttc |
8356081 |
T |
|
| Q |
583 |
aacagtggaaaaaatgttaccttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtga |
682 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8356082 |
aacagtggaaaaaatgtgaccttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtga |
8356181 |
T |
|
| Q |
683 |
acaaggctggaggacccgtacaatca |
708 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
8356182 |
acaaggctggaggaaccgtacaatca |
8356207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 40 - 287
Target Start/End: Original strand, 8355517 - 8355761
Alignment:
| Q |
40 |
tgttccagatcgccaccactagtctggaaagatagtgactttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaa |
139 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8355517 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaaga---gaa |
8355613 |
T |
|
| Q |
140 |
taaaaactacactaagagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttgttttggcatatatgaagaaattc |
239 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355614 |
taaaaactacactaaaagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttgttttggcatatatgaagaaattc |
8355713 |
T |
|
| Q |
240 |
aagacattgattcaacgatttttatttagttattccagctcataaaac |
287 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355714 |
aagacattgattcaacgatttttatttagttattccagctcataaaac |
8355761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 710 - 853
Target Start/End: Original strand, 8356335 - 8356478
Alignment:
| Q |
710 |
ctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaactcactcactatatttcacaaagttcctatgtgggacttgt |
809 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8356335 |
ctcaacagctataagtaatgtaacaatgaatgatgttatacgttggttttataacaaaactcactcactatatttcacaaagttcctatgtgggacttgt |
8356434 |
T |
|
| Q |
810 |
tttttgttttcaaattgtcactatgctattagctacctgcaagt |
853 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8356435 |
tttttgttttcaaattgtcactatgctattagctacctgcaagt |
8356478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 8482788 - 8482621
Alignment:
| Q |
11 |
acatcatcatgagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagata-gtgactttgttatgaacaacttttgggatgttccta |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
8482788 |
acatcatcataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagtgagtttgttatgaacaacttttgggatgttccta |
8482689 |
T |
|
| Q |
110 |
aatagaagagaaattatactaagatcagaataaaaactacactaagagtgtgtttggatagagaatttta |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
8482688 |
aatagaagagaaattatactaagatcagaataaaaactcctcta--agtgtgtttggatagagaatttta |
8482621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 680 - 831
Target Start/End: Original strand, 8433167 - 8433316
Alignment:
| Q |
680 |
tgaacaaggctggaggacccgtacaatcagctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaactcactcacta |
779 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8433167 |
tgaacaaagctggaggacccttacaatcaactcaacagcta--agcaatgtaacaatgaatgaaaccatacgttggttttataacaaaactcactcacta |
8433264 |
T |
|
| Q |
780 |
tatttcacaaagttcctatgtgggacttgttttttgttttcaaattgtcact |
831 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
8433265 |
tatttcacaaagttttgatgtgggacttcttttatgttttcaaattgtcact |
8433316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 772 - 825
Target Start/End: Original strand, 8362239 - 8362292
Alignment:
| Q |
772 |
actcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt |
825 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |
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|
| T |
8362239 |
actcactatatttcaaaaagttccgatgtgggactagttttttgttttcaaatt |
8362292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 750 - 811
Target Start/End: Original strand, 8419317 - 8419380
Alignment:
| Q |
750 |
cgttggttttataacaaaactcactc--actatatttcacaaagttcctatgtgggacttgttt |
811 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||| |
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|
| T |
8419317 |
cgttggttttataacaaaacttactctcactatattttacaaagttccgatgtggggcttgttt |
8419380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 774 - 825
Target Start/End: Original strand, 8406351 - 8406402
Alignment:
| Q |
774 |
tcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt |
825 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
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|
| T |
8406351 |
tcactatatttcataaagttccaatgtgggacttattttttgttttgaaatt |
8406402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 37485994 - 37486059
Alignment:
| Q |
82 |
gttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactaca |
150 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
37485994 |
gttatgaacaacttttgggttgttcataaatggaagagaaactatgctaag---agaataaaaactaca |
37486059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 811
Target Start/End: Original strand, 8342901 - 8342961
Alignment:
| Q |
753 |
tggttttataacaaaactcactc--actatatttcacaaagttcctatgtgggacttgttt |
811 |
Q |
| |
|
|||||||||| ||||||| |||| |||| ||||||||||||||| ||||||||||||||| |
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|
| T |
8342901 |
tggttttatagcaaaacttactctcactaaatttcacaaagttccgatgtgggacttgttt |
8342961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 825
Target Start/End: Original strand, 8415718 - 8415771
Alignment:
| Q |
772 |
actcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt |
825 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||| ||||||||||| ||||| |
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|
| T |
8415718 |
actcactatatttcataaagttccgatgtggggcttattttttgttttgaaatt |
8415771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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