View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16662_high_17 (Length: 394)

Name: NF16662_high_17
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16662_high_17
NF16662_high_17
[»] chr7 (3 HSPs)
chr7 (19-225)||(43911302-43911508)
chr7 (292-378)||(43911147-43911233)
chr7 (45-91)||(42129775-42129821)
[»] chr5 (3 HSPs)
chr5 (134-224)||(13263524-13263610)
chr5 (142-216)||(15120950-15121022)
chr5 (134-205)||(34561832-34561900)
[»] chr1 (4 HSPs)
chr1 (134-220)||(35058507-35058591)
chr1 (134-178)||(1415640-1415684)
chr1 (132-171)||(23909040-23909079)
chr1 (165-206)||(2774202-2774241)
[»] chr8 (4 HSPs)
chr8 (151-220)||(41470019-41470086)
chr8 (159-214)||(25418510-25418569)
chr8 (166-209)||(14354613-14354654)
chr8 (159-187)||(25499075-25499103)
[»] chr3 (2 HSPs)
chr3 (134-219)||(3729638-3729721)
chr3 (156-220)||(44560122-44560184)
[»] chr6 (1 HSPs)
chr6 (132-180)||(2255143-2255191)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 43911508 - 43911302
Alignment:
Q  19 cacagatacaatgtaaagcccttatcttaaaagatcagaataaaactataagccttaatacaatcatcttgtcgtcaatagtcacggtatattattatat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43911508 cacagatacaatgtaaagcccttatcttaaaagatcagaataaaactataagccttaatacaatcatcttgttgtcaatagtcacggtatattattatat 43911409  T
Q  119 aacctgacacagttttgtttggcaagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctc 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43911408 aacctgacacagttttgtttggccagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctc 43911309  T
Q  219 acaagca 225  Q
    |||||||    
T  43911308 acaagca 43911302  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 43911233 - 43911147
Alignment:
Q  292 aagctaattcaggcagcttaaagcttatcattttttctcttcattttatgacagacatgtctttttatatcatttcatgtttataag 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43911233 aagctaattcaggcagcttaaagcttatcattttttctcttcattttatgccagacatgtctttttatatcatttcatgtttataag 43911147  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 42129821 - 42129775
Alignment:
Q  45 ttaaaagatcagaataaaactataagccttaatacaatcatcttgtc 91  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  42129821 ttaaaagatcagaatgaaactataagccttaacacaatcatcttgtc 42129775  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 13263610 - 13263524
Alignment:
Q  134 tgtttggcaagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctcacaagc 224  Q
    |||||||| |||||||||||||| |||||| ||||||| ||    ||||||||||| |||||  |||||||||| | ||||||||||||||    
T  13263610 tgtttggcgagacacaattttgatcttatagcttataaact----tatgactaaaatagacttgtttggtaacaatcattttctcacaagc 13263524  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 15121022 - 15120950
Alignment:
Q  142 aagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttc 216  Q
    |||||||||||||||||||||| ||||||||||  | |||| |||||| ||||   |||||||||||||||||||    
T  15121022 aagacacaattttgagcttatagcttataagct--tgtatgcctaaaatagacctgtttggtaacagttattttc 15120950  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 34561832 - 34561900
Alignment:
Q  134 tgtttggcaagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaa 205  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||||  ||||| |||||||| || |||||    
T  34561832 tgtttgccaagacacaattt-gagcttatagcttataagctcatata--actaagaaagactcgttcggtaa 34561900  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 35058507 - 35058591
Alignment:
Q  134 tgtttggcaagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctcac 220  Q
    ||||||| ||||||||  ||||||||||||||||||||||||   |||||||||| | ||| | |||||||||||| |||| |||||    
T  35058507 tgtttggtaagacacatgtttgagcttataacttataagctc--gtatgactaaagatgacccgtttggtaacagtcatttgctcac 35058591  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 1415640 - 1415684
Alignment:
Q  134 tgtttggcaagacacaattttgagcttataacttataagctcata 178  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||    
T  1415640 tgtttggcaagacatatttttgagcttatagcttataagctcata 1415684  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 23909079 - 23909040
Alignment:
Q  132 tttgtttggcaagacacaattttgagcttataacttataa 171  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  23909079 tttgtttggcaagacataattttgagcttataccttataa 23909040  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 2774202 - 2774241
Alignment:
Q  165 cttataagctcatatatgactaaaaaagactcatttggtaac 206  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  2774202 cttataagctcatat--gactaaaaaagactcatttggtaac 2774241  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 41470019 - 41470086
Alignment:
Q  151 ttttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctcac 220  Q
    ||||| ||||||| ||||||||||||||||  |||||||||||| | ||||||||| || ||||||||||    
T  41470019 ttttgggcttatagcttataagctcatata--actaaaaaagacccgtttggtaactgtcattttctcac 41470086  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 25418510 - 25418569
Alignment:
Q  159 ttataacttataagctcatatatgac----taaaaaagactcatttggtaacagttattt 214  Q
    ||||||||||||||||||||||||||    |||||||||  ||||||||||| |||||||    
T  25418510 ttataacttataagctcatatatgactaattaaaaaagatccatttggtaaccgttattt 25418569  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 14354654 - 14354613
Alignment:
Q  166 ttataagctcatatatgactaaaaaagactcatttggtaacagt 209  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||    
T  14354654 ttataagctcatat--gactaaaaaagacccatttggtaacagt 14354613  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 25499075 - 25499103
Alignment:
Q  159 ttataacttataagctcatatatgactaa 187  Q
    |||||||||||||||||||||||||||||    
T  25499075 ttataacttataagctcatatatgactaa 25499103  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 3729638 - 3729721
Alignment:
Q  134 tgtttggcaagacacaattttgagcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctca 219  Q
    ||||||| ||||||||  |||||||||||| |||||||||||   ||||||||||||| |  ||||||||||| || |||||||||    
T  3729638 tgtttggaaagacacatatttgagcttataccttataagctc--ttatgactaaaaaatatccatttggtaaccgtgattttctca 3729721  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 44560122 - 44560184
Alignment:
Q  156 agcttataacttataagctcatatatgactaaaaaagactcatttggtaacagttattttctcac 220  Q
    ||||||||||||||||| ||||||  |||||||||||||   ||||||||| || ||||||||||    
T  44560122 agcttataacttataagttcatat--gactaaaaaagacatgtttggtaaccgtcattttctcac 44560184  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 2255143 - 2255191
Alignment:
Q  132 tttgtttggcaagacacaattttgagcttataacttataagctcatata 180  Q
    ||||||||||| |||||  ||||||||||||| ||||||||||||||||    
T  2255143 tttgtttggcatgacacttttttgagcttatagcttataagctcatata 2255191  T

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