View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_high_19 (Length: 372)
Name: NF16662_high_19
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 363
Target Start/End: Original strand, 5272335 - 5272685
Alignment:
| Q |
15 |
caattaattaattacaccaatgaatttgtcacatgaaaatgccaccagtttcaatattaagacaaaaatacctttgttccgtttggtacaagattttgta |
114 |
Q |
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| T |
5272335 |
caattaattaattacaccaatgaatttgtcacatgaaaatgccaccagtttcaatattaagacaaaaatacctttgttccgtttggtacaagattttgta |
5272434 |
T |
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| Q |
115 |
agactcttagtcgttcatttattctctctcttcttttctgcaaaatccaaataaaaaa-gatcataaatatgcacaaactaatttttgctttgatatgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5272435 |
agactcttagtcgttcatttattctctctcttcttttctgcaaaatccaaataaaaaaggatcataaatatgcacaaactaatttttgttttgatatgaa |
5272534 |
T |
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| Q |
214 |
aatatataaataaatcaagctgg-nnnnnnngtttgagttgaagtaattgattaattacccttgcatatagactttggggatctgttgcagatcctctac |
312 |
Q |
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| T |
5272535 |
aatatataaataaatcaagctggttttttttgtttgagttgaagtaattgattaattacccttgcatatagactttggggatctgttgcagatcctctac |
5272634 |
T |
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| Q |
313 |
tagctcttgtcttcccatttgagttgagagtagttcctccactattttctt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272635 |
tagctcttgtcttcccatttgagttgagagtagttcctccactattttctt |
5272685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 47456334 - 47456257
Alignment:
| Q |
265 |
taattacccttgcatatagactttggggatctgttgcagatcctctactagctcttgtcttcccatttgagttgagag |
342 |
Q |
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|||||||||||||||| || ||||| ||||||||||| |||||||||||||||||| | || ||||| |||||||||| |
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| T |
47456334 |
taattacccttgcataaaggctttgaggatctgttgctgatcctctactagctcttttttttccattggagttgagag |
47456257 |
T |
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