View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_high_20 (Length: 368)
Name: NF16662_high_20
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 1266245 - 1265906
Alignment:
| Q |
11 |
cagagaagaaaatgaggaagaaggcgaccaacaatgtcatggcttatagttttcatgtcttgtgaggttgatttggaaacaagggaagccatgtcgagga |
110 |
Q |
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| T |
1266245 |
cagagaagaaaatgaggaagaaggcgaccgacaatgtcatggcttatagttttcatgtcttgtgaggttgatttggaaacaagggaagccatgtcgagga |
1266146 |
T |
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| Q |
111 |
tgttcccggtgaagaagctaggtctcgggccccgaacaccttgcatctccatgattttcttgatgcgtagtggagtgaggaagtaacatgataggttttc |
210 |
Q |
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| T |
1266145 |
tgttcccggtgaagaagctaggtctcgggccccgaacaccttgcatctccatgattttcttgatgcgcagtggagtgaggaagtaacatgataggttttc |
1266046 |
T |
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| Q |
211 |
atacaagagtttaaatagaaaagtcactagtatgaacaaaagtatattaagaaccaccatcatggagatgannnnnnnnnnnngtggtgctaatatatat |
310 |
Q |
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| T |
1266045 |
atacaagagtttaaatagaaaagtcactagtatgaacaaaagtatattaagaaccaccatcatggagatga--ttttttttttgtggtgccaatatatat |
1265948 |
T |
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| Q |
311 |
tttgggatgatgagaagtgaatttgagattataggaagttag |
352 |
Q |
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| T |
1265947 |
tttgggatgatgagaagtgaatttgagattataggaagttag |
1265906 |
T |
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