View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16662_high_22 (Length: 339)
Name: NF16662_high_22
Description: NF16662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16662_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 29983380 - 29983700
Alignment:
| Q |
1 |
attcgagcaaggacaggaaaggctgtgatcgaaagagtaacgcccatgaaaacaaggaaggaagttggattaacatctttgtttattgtggcgcgaagaa |
100 |
Q |
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| T |
29983380 |
attcgagcaaggacaggaaaggctgtgatcgagagagcaacgcccatgaaaacaaggaaggaagttggattagcatctttgtttattgtggcacgaagaa |
29983479 |
T |
|
| Q |
101 |
caagtgaggtgccaatgccaagtacaaatgggactgtgattccagcaagggctatgcataaggcttttgaacctgttttgcgtatcgaacgcatgtcgag |
200 |
Q |
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| T |
29983480 |
caagtgaggtgccaatgccaagtacaaatgggactgtgattccagcaagggctatgcataaggcttttgaacctgttttgcgtatcgaacgcatgtcgag |
29983579 |
T |
|
| Q |
201 |
ttcaagacctactagaaataagaagaatagtaggccaatgttggctagtgtatcaagaactgttaagcttcttttagggaagaatgtatctagaaatttc |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29983580 |
ttcaagacctactagaaataagaagaatagcaggccaatgttggctagtgtatcaagaactgttaagcttcttttagggaagaatgtatctagaaatttc |
29983679 |
T |
|
| Q |
301 |
ttgttcctcccaattgctgag |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29983680 |
ttgttcctcccaattgctgag |
29983700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 51403363 - 51403167
Alignment:
| Q |
85 |
attgtggcgcgaagaacaagtgaggtgccaatgccaagtacaaatgggactgtgattccagcaagggctatgcataaggcttttgaacctgttttgcgta |
184 |
Q |
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|||||||| | |||||||| || || || |||||||| |||||||||| |||||||||| |||||| || |||||||||| ||||||| | || | |
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| T |
51403363 |
attgtggctctaagaacaacggatgttcctatgccaagaacaaatgggaatgtgattccacaaagggcaattgctaaggcttttttacctgttctacgga |
51403264 |
T |
|
| Q |
185 |
tcgaacgcatgtcgagttcaagacctactagaaataagaagaatagtaggccaatgttggctagtgtatcaagaactgttaagcttcttttagggaa |
281 |
Q |
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| T |
51403263 |
ttgaacgcatgtcgagttcaagacctactaggaataagaagaacaaaagaccaatgttggctagtgtgtctaggactgttaagcttctctttgggaa |
51403167 |
T |
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